View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_10 (Length: 606)
Name: NF18575_low_10
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 12497419 - 12497732
Alignment:
| Q |
18 |
ccattcatgtcatatatcgtagcggaaagcccttgagcaaaagagctttaaaacctgttagtacccttattattttaggatcaggtttgagattaccttc |
117 |
Q |
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| T |
12497419 |
ccattcatgtcatatatcgtagcggaaagcccttgagcaaaagagctttaaaacctgttagtactcttattattttaggatcaggtttgagattatcttc |
12497518 |
T |
|
| Q |
118 |
cttcttttccatccatatcaaaacattttatggccattcttcaattttttgttttattcttttgtaggttggtcatactgccgagatgcttaatctgttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12497519 |
cttcttttccatccatatcaaaacattttatggccattcttcaattttttgttttattcttttgtagg-tggtcatactgccgagatgcttaatctgttg |
12497617 |
T |
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| Q |
218 |
gcagtgttagagaaagataggtttatattgcctgaagtccagtttggatgtgagcagagttagacgtgactgacgattatatacgcagctatttatgatt |
317 |
Q |
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| T |
12497618 |
acagtgttagagaaagataggtttatattgcctgaagtccagtttggatgtgagcagagttagacgtgactgacgattatatacgcagctatttatgatt |
12497717 |
T |
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| Q |
318 |
caccacttgatgctt |
332 |
Q |
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| T |
12497718 |
caccatttgatgctt |
12497732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 333 - 564
Target Start/End: Original strand, 12498983 - 12499212
Alignment:
| Q |
333 |
taatttttaattgctttgttgttgttaggttatatgaatgttgttctttgcccctcaagaaaataaaggaagatgtgattgagcttattgaaacacatac |
432 |
Q |
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| T |
12498983 |
taatttttaattgctttgttgttgttaggttatatgaatgttgttctttgcccctcaagaaaataaaggaagatgtgattgagcttattgaaacacatac |
12499082 |
T |
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| Q |
433 |
cattagtttgtgaggtgaattaagcttttcttgcaaagcatttactccctccattacgtagaaagtgtcacttgcaaatg--nnnnnnngtctcaaaaca |
530 |
Q |
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| T |
12499083 |
cattagtttgtgaggtga---aagcttttcttgc-aagcatttactccctccattacatagaaagtgtcacttgcaaatgaaaaaaaaagtctcaaaaca |
12499178 |
T |
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| Q |
531 |
agtattgttttatattttcattgcaacattttat |
564 |
Q |
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| T |
12499179 |
agtattgttttatattttcattgcaacattttat |
12499212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 44671355 - 44671437
Alignment:
| Q |
21 |
ttcatgtcatatatcgtagcggaaagcccttgagcaaaagagctttaaaacctgttagtacccttattattttaggatcaggt |
103 |
Q |
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| T |
44671355 |
ttcatgtcatatatagtagtggcaggcccttgagcaaaagagcttcaaaacctgtcagtacccttattattttaggatcaggt |
44671437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 44671437 - 44671490
Alignment:
| Q |
187 |
tggtcatactgccgagatgcttaatctgttggcagtgttagagaaagataggtt |
240 |
Q |
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| T |
44671437 |
tggtcatactgccgagatgcttaatctattggcggtgttacagaaagataggtt |
44671490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 20016458 - 20016506
Alignment:
| Q |
103 |
tttgagattaccttccttcttttccatccatatcaaaacattttatggc |
151 |
Q |
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| T |
20016458 |
tttgagattaccttccttcttttccatccatatcaaaacatattatggc |
20016506 |
T |
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