View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_12 (Length: 592)
Name: NF18575_low_12
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 330 - 582
Target Start/End: Original strand, 37304123 - 37304383
Alignment:
| Q |
330 |
ggaaccaaggcaaaaactacatattactagcaatcagctgttccttcnnnnnnnnc--------cagtaaaataacttttactgatggtaacctaattca |
421 |
Q |
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| T |
37304123 |
ggaaccaaggcaaaaactacatattactagcaatcagctgttccttcaaaaaaaaaaaaaaaaacagtaaaataacttttactgatggtaacctaattca |
37304222 |
T |
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| Q |
422 |
agtggccggagtatgaatgctgtttggtgactttgtcagtgtggactctgtctttgggggactattcataccatacatgatccattaactaggactcgac |
521 |
Q |
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| T |
37304223 |
agtggccggagtatgaatgctgtttggtgactttgtcagtgtggactctgtctttgggggactattcataccatacatgatccattaactaggactcgac |
37304322 |
T |
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| Q |
522 |
caactttaactactgttcacgtccaacatttaagagccctccctatgtgtctgggcctttg |
582 |
Q |
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| T |
37304323 |
caactttaactactgttcacgtccaacatttaagagccctccctatgtgtctgggcctttg |
37304383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 37303820 - 37304092
Alignment:
| Q |
19 |
gtatttgggtttagccatttagcttgtgtgatttgttggttttgttgtgatattatatgtaacatttcgtactcttgagttatatatgtgcacttcttgt |
118 |
Q |
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| T |
37303820 |
gtatttgggtttagccatttagcttgtgtgctttgttg---------tgatattgtatgtaacatttcgtactcttgagttatatatgtgcacttcttgt |
37303910 |
T |
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| Q |
119 |
gatggttagaacttttgttttggttaatatactctttagcttgttnnnnnnnnnnttaaaatacaaaatgttatttt-ttcgttgagggtggtaatcaaa |
217 |
Q |
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| T |
37303911 |
gatggttagaacttttgttttggttaatatactctttagcttgttaaaaaaaaaattaaaaaacaaaatgttatttttttcgttgagggtggtaatcaaa |
37304010 |
T |
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| Q |
218 |
ctatggatctcctcatctttcgactgcttaactcctctttttccacacaaaccatgatgtaaaagtaattaactcaaaacaa |
299 |
Q |
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| T |
37304011 |
ctatggatctcctcatctttcaatttcttaactcctctttttccacacaaaccatgatgtaaaagtaattaactcaaaacaa |
37304092 |
T |
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