View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_13 (Length: 558)
Name: NF18575_low_13
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 6265498 - 6264969
Alignment:
| Q |
1 |
taagtttttgtttatttgagtgatacatgggatagcttgcgagatcgtgatactttcgcgagattttattcgcggtaagtagcaatttcctttgagaaaa |
100 |
Q |
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| T |
6265498 |
taagtttttgtttatttgagtgatacatggggtagcttacgagatcgtgatactttcgcgagattttattcgcggtaagtagcaatttcctttgagaaaa |
6265399 |
T |
|
| Q |
101 |
ttaatgagaagannnnnnnnnnnatcataacaaaactaaagaatgacatgagggacagagattagccctgccccgttaaaagttatgtgtctattgttgg |
200 |
Q |
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| T |
6265398 |
ttaatgagaagattttttttt--atcataacaaaactaaagaatgacatgagggacagagattagccctgccccgttaaaagttatgtgtctattgttgg |
6265301 |
T |
|
| Q |
201 |
attttgtttataactccaatatgttaatgtgtaaagattttaaattttaatccgaaactttttcattttaaaaggagaattggtggaatcgtttaatgtn |
300 |
Q |
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| T |
6265300 |
attttgtttataactccaat--gttaatgtgtaaatattttaaattttaatccgaaactttttcattttaaaaggagaattggtggaatcgtttaatgta |
6265203 |
T |
|
| Q |
301 |
nnnnnnnnnnnntctttaaaaataaattactatggtgcaacatttctcatgatatatgataccaatttaactctaaatacttgattatgagacacagtac |
400 |
Q |
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| T |
6265202 |
aaaaaaaaaat-tctttaaaaaaaaattactatggtgcaacatttctcatgatatatgataccaatttaactctaaatacttgattatgagacacagtac |
6265104 |
T |
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| Q |
401 |
tatacccaccggcagaagtgactgaaccatccatacgtatatttggcttcatatccattttacaaaactttaaagacaacatacaaaaatttgaatcaac |
500 |
Q |
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| T |
6265103 |
tatacccaccggcagaagtgactgaaccatccatacgtatatttggcttcatatccattttacaaaactttaaagacaacatacaaaaatttgaatcaac |
6265004 |
T |
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| Q |
501 |
agaagttgaagacataaattacaaaggtgcaaagt |
535 |
Q |
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| T |
6265003 |
agaagtttaagacataaattacaaaggtgcaaagt |
6264969 |
T |
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