View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18575_low_15 (Length: 483)

Name: NF18575_low_15
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18575_low_15
NF18575_low_15
[»] chr1 (15 HSPs)
chr1 (146-483)||(34366398-34366735)
chr1 (10-123)||(34366291-34366404)
chr1 (33-80)||(13401596-13401643)
chr1 (36-79)||(19262925-19262968)
chr1 (30-79)||(25532973-25533022)
chr1 (19-80)||(28039861-28039922)
chr1 (28-81)||(34808573-34808626)
chr1 (30-79)||(38448878-38448927)
chr1 (30-79)||(52441523-52441572)
chr1 (31-79)||(15803250-15803298)
chr1 (31-79)||(17283951-17283999)
chr1 (30-70)||(25498774-25498814)
chr1 (47-79)||(40800297-40800329)
chr1 (40-80)||(45761389-45761429)
chr1 (19-79)||(47528448-47528508)
[»] chr4 (16 HSPs)
chr4 (21-79)||(36203236-36203294)
chr4 (25-78)||(11286788-11286841)
chr4 (28-79)||(42316834-42316885)
chr4 (32-78)||(1753366-1753412)
chr4 (30-80)||(26008061-26008111)
chr4 (30-79)||(7230280-7230329)
chr4 (19-68)||(11144666-11144715)
chr4 (19-80)||(19908691-19908752)
chr4 (31-80)||(31780744-31780793)
chr4 (45-78)||(38541899-38541932)
chr4 (19-68)||(43182994-43183043)
chr4 (36-80)||(8026263-8026307)
chr4 (28-79)||(16612639-16612691)
chr4 (19-79)||(19124623-19124683)
chr4 (32-80)||(27655730-27655778)
chr4 (30-78)||(46676510-46676558)
[»] chr6 (13 HSPs)
chr6 (19-79)||(28046179-28046239)
chr6 (30-79)||(4450262-4450311)
chr6 (32-77)||(334142-334187)
chr6 (30-79)||(18256883-18256932)
chr6 (31-79)||(8381207-8381255)
chr6 (32-79)||(7081668-7081715)
chr6 (28-77)||(8637447-8637496)
chr6 (19-80)||(18254102-18254163)
chr6 (30-79)||(19265536-19265585)
chr6 (30-79)||(33824881-33824930)
chr6 (33-85)||(14945528-14945580)
chr6 (28-80)||(15187062-15187114)
chr6 (28-80)||(15473492-15473544)
[»] chr5 (9 HSPs)
chr5 (20-73)||(25709739-25709792)
chr5 (18-79)||(38353774-38353835)
chr5 (18-78)||(18391601-18391661)
chr5 (32-79)||(2001980-2002027)
chr5 (32-86)||(25607072-25607126)
chr5 (30-79)||(8545001-8545050)
chr5 (31-80)||(16531288-16531337)
chr5 (19-79)||(16133066-16133126)
chr5 (45-85)||(32550173-32550213)
[»] chr8 (13 HSPs)
chr8 (19-79)||(6314324-6314384)
chr8 (34-78)||(39164982-39165026)
chr8 (30-85)||(574378-574433)
chr8 (19-78)||(9655998-9656057)
chr8 (36-79)||(32223897-32223940)
chr8 (37-79)||(14181367-14181409)
chr8 (33-79)||(41188855-41188901)
chr8 (30-79)||(19778065-19778114)
chr8 (30-79)||(27718906-27718955)
chr8 (30-79)||(27750916-27750965)
chr8 (32-85)||(30623287-30623340)
chr8 (28-76)||(11771710-11771758)
chr8 (19-75)||(43962025-43962081)
[»] chr2 (13 HSPs)
chr2 (25-76)||(3113734-3113785)
chr2 (19-79)||(7206125-7206185)
chr2 (19-79)||(39068709-39068769)
chr2 (19-78)||(34903518-34903577)
chr2 (18-80)||(13000684-13000746)
chr2 (30-88)||(29734682-29734740)
chr2 (30-87)||(4056782-4056839)
chr2 (32-85)||(16204831-16204884)
chr2 (30-79)||(24593376-24593425)
chr2 (30-79)||(27411092-27411141)
chr2 (30-79)||(33063986-33064035)
chr2 (10-79)||(37320509-37320578)
chr2 (19-79)||(24393245-24393305)
[»] chr7 (5 HSPs)
chr7 (27-80)||(8615022-8615075)
chr7 (28-79)||(38858182-38858233)
chr7 (30-79)||(46987086-46987135)
chr7 (30-79)||(48527190-48527239)
chr7 (35-79)||(25246771-25246815)
[»] chr3 (3 HSPs)
chr3 (37-74)||(9274709-9274746)
chr3 (32-80)||(25917599-25917647)
chr3 (30-78)||(28266717-28266765)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 146 - 483
Target Start/End: Original strand, 34366398 - 34366735
Alignment:
Q  146 tatcataaagtgcaaagtatcattcatctttcaaatattgttaatatcattaatttcttagaacgtgaatagccatgccaatacgacgtcagtggttgct 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  34366398 tatcataaagtgcaaagtatcattcatctttcaaatattgttaatatcattaatttcttagaacgtgagtagccatgtcaatacgacgtcagtggttgct 34366497  T
Q  246 caactatttattgtcgcaaaaatgtccaccgtatgtggtgtcgtgcaatattatgtcatcaatcaactacaactataggacaaacaaactttatcaatgt 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34366498 caactatttattgtcgcaaaaatgtccaccgtatgtggtgtcgtgcaatattatgtcatcaatcaactacaactataggacaaacaaactttatcaatgt 34366597  T
Q  346 attgcttccattttctacattatatagtttattcacgttaacatatgtgacattaatatttgtttatttttgtccactagggatgtgatgggtcaattct 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34366598 attgcttccattttctacattatatagtttattcacgttaacatatgtgacattaatatttgtttatttttgtccactagggatgtgatgggtcaattct 34366697  T
Q  446 gcttgattccactaaagataatacagcagaaaaggatt 483  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  34366698 gcttgattccactaaggataatacagcagaaaaggatt 34366735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 34366291 - 34366404
Alignment:
Q  10 ggtgcccaaggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcacacggacgattaggtccgcacttgtaaacat 109  Q
    |||| ||| |||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||    
T  34366291 ggtgtccagggttcaaacctcagaccttgcatatgttatgcactgtctttatcaactgaactaagctcaaagggacgattaggtctgcacttataaacat 34366390  T
Q  110 atattcatgtcata 123  Q
    |||||||| |||||    
T  34366391 atattcatatcata 34366404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 13401643 - 13401596
Alignment:
Q  33 accttgcatatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    ||||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  13401643 accttacatatattatgcattgtctctatcaactgaactaagctcaca 13401596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 19262925 - 19262968
Alignment:
Q  36 ttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||    
T  19262925 ttgcatatgttatgcattgtccttatcaactgagctaagctcac 19262968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 25533022 - 25532973
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| ||||  || ||||||||||||||||||    
T  25533022 cggaccttgcatatattatgcattgtccataccaactgaactaagctcac 25532973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 28039861 - 28039922
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    |||||||| ||| |||||||||||| ||||||| |||| ||| |||||||  ||||||||||    
T  28039861 ggttcaaacctcagaccttgcatatattatgcattgtccttaccaactgagttaagctcaca 28039922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 34808573 - 34808626
Alignment:
Q  28 ctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcacac 81  Q
    |||| ||||||||||| ||||||| |||| ||| ||||||| ||||||||||||    
T  34808573 ctcgaaccttgcatatattatgcattgtccttaacaactgagctaagctcacac 34808626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 38448878 - 38448927
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| |||| ||| ||||||| ||||||||||    
T  38448878 cggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 38448927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 52441523 - 52441572
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| ||||| || ||||||| ||||||||||    
T  52441523 cggaccttgcatatattatgcattgtctataccaactgagctaagctcac 52441572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 15803250 - 15803298
Alignment:
Q  31 ggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    ||||||||||||| ||||||| |||| ||  ||||||||||||||||||    
T  15803250 ggaccttgcatatattatgcattgtccttgccaactgaactaagctcac 15803298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 17283999 - 17283951
Alignment:
Q  31 ggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    ||||||||||||| ||||||| |||| ||| ||||||| ||||||||||    
T  17283999 ggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 17283951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 25498774 - 25498814
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaac 70  Q
    |||||||||||||| ||||||||| || |||||||||||||    
T  25498774 cggaccttgcatatattatgcaatatccttatcaactgaac 25498814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 40800297 - 40800329
Alignment:
Q  47 atgcaatgtctttatcaactgaactaagctcac 79  Q
    ||||||||||| |||||||||||||||||||||    
T  40800297 atgcaatgtctctatcaactgaactaagctcac 40800329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 45761429 - 45761389
Alignment:
Q  40 atatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    |||| ||||||||| |||||||||| |||||||||||||||    
T  45761429 atatattatgcaatatctttatcaattgaactaagctcaca 45761389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 47528448 - 47528508
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    ||||| || |||||||||||| ||| ||||||| |||| ||| ||||||| ||||||||||    
T  47528448 ggttcgaacctcggaccttgcgtatattatgcattgtccttaccaactgagctaagctcac 47528508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 36203294 - 36203236
Alignment:
Q  21 ttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||    
T  36203294 ttcaaatctcggaccttgcatatattatgcattgtccttatcaactgagctaagctcac 36203236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 11286788 - 11286841
Alignment:
Q  25 aatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctca 78  Q
    |||||| |||||||||||| ||||||| ||||| || |||||||||||||||||    
T  11286788 aatctcagaccttgcatatattatgcattgtctctaccaactgaactaagctca 11286841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 42316834 - 42316885
Alignment:
Q  28 ctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||||| ||||||| |||||||| |||||||  |||||||||    
T  42316834 ctcggaccttgcatatattatgcactgtctttaccaactgagttaagctcac 42316885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 1753366 - 1753412
Alignment:
Q  32 gaccttgcatatgttatgcaatgtctttatcaactgaactaagctca 78  Q
    |||||||||||||||||||| |||| ||| |||||||| ||||||||    
T  1753366 gaccttgcatatgttatgcattgtccttaccaactgaagtaagctca 1753412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 26008061 - 26008111
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    |||||||||||||| ||||||| |||||||| ||| |||||||| ||||||    
T  26008061 cggaccttgcatatattatgcattgtctttaccaattgaactaaactcaca 26008111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 7230329 - 7230280
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| |||| ||| ||||||| ||||||||||    
T  7230329 cggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 7230280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 11144666 - 11144715
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactga 68  Q
    |||||||| | | |||||||||||| ||||||| ||||||||||||||||    
T  11144666 ggttcaaaccccagaccttgcatatattatgcattgtctttatcaactga 11144715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 19908752 - 19908691
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    ||||| || |||||||||||||||| ||||||| |||| ||| |||||||  ||||||||||    
T  19908752 ggttcgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagctcaca 19908691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 31780793 - 31780744
Alignment:
Q  31 ggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    ||||||||||||| ||||||| |||| ||| ||||||| |||||||||||    
T  31780793 ggaccttgcatattttatgcattgtccttaccaactgagctaagctcaca 31780744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 38541899 - 38541932
Alignment:
Q  45 ttatgcaatgtctttatcaactgaactaagctca 78  Q
    ||||||||||||||||||||||||||||| ||||    
T  38541899 ttatgcaatgtctttatcaactgaactaaactca 38541932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 43182994 - 43183043
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactga 68  Q
    |||||||| ||  |||||||||||| ||||||| ||||||||||||||||    
T  43182994 ggttcaaaccttagaccttgcatatattatgcattgtctttatcaactga 43183043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 8026263 - 8026307
Alignment:
Q  36 ttgcatatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    |||||||  |||||||||||| ||||||||||| |||||||||||    
T  8026263 ttgcataaattatgcaatgtcattatcaactgagctaagctcaca 8026307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 16612691 - 16612639
Alignment:
Q  28 ctcggaccttgcatatgttatgcaat-gtctttatcaactgaactaagctcac 79  Q
    |||||||||||||||| || |||| | ||| ||||||||||||||||||||||    
T  16612691 ctcggaccttgcatatattctgcatttgtccttatcaactgaactaagctcac 16612639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 19124623 - 19124683
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    ||||| || ||| |||||||||||| ||||| | ||||||||||||||||  |||||||||    
T  19124623 ggttcgaacctcagaccttgcatatattatgtattgtctttatcaactgagttaagctcac 19124683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 27655778 - 27655730
Alignment:
Q  32 gaccttgcatatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    |||||||||||| ||||||| ||| | |||||||||||||||| |||||    
T  27655778 gaccttgcatatattatgcattgtttctatcaactgaactaagttcaca 27655730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 46676510 - 46676558
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctca 78  Q
    |||||||||||||| ||||||| |||| ||| ||||||| |||||||||    
T  46676510 cggaccttgcatatattatgcattgtccttaccaactgagctaagctca 46676558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 28046179 - 28046239
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||| |||  ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  28046179 ggttcaaacctcaaaccttgcatatattatgcattgtctttatcaactgaactaagctcac 28046239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 4450311 - 4450262
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  4450311 cggaccttgcatatattatgcattgtctttatcaactgagctaagctcac 4450262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 334187 - 334142
Alignment:
Q  32 gaccttgcatatgttatgcaatgtctttatcaactgaactaagctc 77  Q
    |||||||||||| ||||||| |||||||||||||||| ||||||||    
T  334187 gaccttgcatatattatgcattgtctttatcaactgagctaagctc 334142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 18256932 - 18256883
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| |||| ||||||||||| ||||||||||    
T  18256932 cggaccttgcatatattatgcattgtccttatcaactgagctaagctcac 18256883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 8381207 - 8381255
Alignment:
Q  31 ggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    ||||||||||||||||||||| |||||||| |||||||  |||||||||    
T  8381207 ggaccttgcatatgttatgcattgtctttaccaactgagttaagctcac 8381255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 7081668 - 7081715
Alignment:
Q  32 gaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||| ||||| | |||||||||||||||| ||||||||||    
T  7081668 gaccttgcatatattatgtattgtctttatcaactgagctaagctcac 7081715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 8637447 - 8637496
Alignment:
Q  28 ctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctc 77  Q
    |||||||||||||||| ||||||| ||||  || ||||||||||||||||    
T  8637447 ctcggaccttgcatatattatgcattgtccctaccaactgaactaagctc 8637496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 18254102 - 18254163
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    ||||| |||| |||||||||||| | ||||||| |||| ||| ||||||| |||||||||||    
T  18254102 ggttcgaatcccggaccttgcatgtattatgcattgtccttaccaactgagctaagctcaca 18254163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 19265536 - 19265585
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| |||||||| | |||||| |||||||||    
T  19265536 cggaccttgcatattttatgcattgtctttaccgactgaagtaagctcac 19265585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 33824930 - 33824881
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| |||| ||||||||||| ||||| ||||    
T  33824930 cggaccttgcatatattatgcattgtccttatcaactgagctaagatcac 33824881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 14945528 - 14945580
Alignment:
Q  33 accttgcatatgttatgcaatgtctttatcaactgaactaagctcacacggac 85  Q
    ||||| ||||| ||||||| ||||| |||||||||| ||||||||||| ||||    
T  14945528 accttacatatattatgcactgtctctatcaactgagctaagctcacagggac 14945580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 15187114 - 15187062
Alignment:
Q  28 ctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    |||||||||||||||| ||||||| |||  |||||| |||| |||||||||||    
T  15187114 ctcggaccttgcatatattatgcattgtacttatcagctgagctaagctcaca 15187062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 15473492 - 15473544
Alignment:
Q  28 ctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    |||||||||||||||| ||||||| |||  |||||| |||| |||||||||||    
T  15473492 ctcggaccttgcatatattatgcattgtacttatcagctgagctaagctcaca 15473544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 25709792 - 25709739
Alignment:
Q  20 gttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaa 73  Q
    ||||||| |||||||||||||||| ||||||| ||| |||||||||||||||||    
T  25709792 gttcaaacctcggaccttgcatatattatgcattgtttttatcaactgaactaa 25709739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 38353835 - 38353774
Alignment:
Q  18 aggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||| ||||||||||||||| ||||||  |||| ||| ||||||||||||||||||    
T  38353835 aggttcaaatttcggaccttgcatatattatgcgttgtccttaccaactgaactaagctcac 38353774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 18391661 - 18391601
Alignment:
Q  18 aggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctca 78  Q
    |||||| || |||||||||||||||| ||||||| |||| ||| ||||||| |||||||||    
T  18391661 aggttcgaacctcggaccttgcatattttatgcattgtccttaccaactgagctaagctca 18391601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 2002027 - 2001980
Alignment:
Q  32 gaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    ||||||| |||| |||||||||||||||| |||||||| |||||||||    
T  2002027 gaccttgtatatattatgcaatgtctttaccaactgaaataagctcac 2001980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 25607072 - 25607126
Alignment:
Q  32 gaccttgcatatgttatgcaatgtctttatcaactgaactaagctcacacggacg 86  Q
    |||||||||||| ||||||| |||||||||||||| | ||| ||||||| |||||    
T  25607072 gaccttgcatatattatgcattgtctttatcaactaatctatgctcacagggacg 25607126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 8545001 - 8545050
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| |||| |||||||||||  |||||||||    
T  8545001 cggaccttgcatatattatgcattgtccttatcaactgagttaagctcac 8545050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 16531288 - 16531337
Alignment:
Q  31 ggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    ||||||||||||| ||||||| |||| ||| ||||||||| |||||||||    
T  16531288 ggaccttgcatatattatgcattgtccttaccaactgaaccaagctcaca 16531337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 16133066 - 16133126
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||| ||| ||| |||||||||||| ||||||| |||| ||| ||||||| ||||||||||    
T  16133066 ggtttaaacctctgaccttgcatatattatgcattgtccttaccaactgagctaagctcac 16133126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 32550213 - 32550173
Alignment:
Q  45 ttatgcaatgtctttatcaactgaactaagctcacacggac 85  Q
    ||||||||||||| || ||||||||||||||||||| ||||    
T  32550213 ttatgcaatgtctctaccaactgaactaagctcacagggac 32550173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 6314324 - 6314384
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    ||||| ||| ||||||||||||||| ||||||| |||| ||||||||||| ||||||||||    
T  6314324 ggttcgaatttcggaccttgcatattttatgcattgtccttatcaactgagctaagctcac 6314384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 39165026 - 39164982
Alignment:
Q  34 ccttgcatatgttatgcaatgtctttatcaactgaactaagctca 78  Q
    |||||||||||||||||||||||| || ||||||| |||||||||    
T  39165026 ccttgcatatgttatgcaatgtctctaccaactgagctaagctca 39164982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 574433 - 574378
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcacacggac 85  Q
    |||||||| ||||| ||||||| ||||| |||||||||| ||||||||||| ||||    
T  574433 cggaccttacatatattatgcattgtctatatcaactgagctaagctcacaaggac 574378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 9655998 - 9656057
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctca 78  Q
    ||||| || |||||||||||||||| ||||||| |||| ||| ||||||| |||||||||    
T  9655998 ggttcgaacctcggaccttgcatattttatgcattgtccttaccaactgagctaagctca 9656057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 32223897 - 32223940
Alignment:
Q  36 ttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||| ||||||| ||||| |||||||||||||||||||||    
T  32223897 ttgcatatattatgcattgtctctatcaactgaactaagctcac 32223940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 14181367 - 14181409
Alignment:
Q  37 tgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    ||||||| |||||||||||| ||||||||||| ||||||||||    
T  14181367 tgcatatattatgcaatgtccttatcaactgatctaagctcac 14181409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 41188855 - 41188901
Alignment:
Q  33 accttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    ||||||||||| |||| ||||||| ||| ||||||||||||||||||    
T  41188855 accttgcatatattatacaatgtccttaccaactgaactaagctcac 41188901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 19778114 - 19778065
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| |||| ||| ||||||| ||||||||||    
T  19778114 cggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 19778065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 27718906 - 27718955
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| ||||  |||||||||| ||||||||||    
T  27718906 cggaccttgcatatattatgcattgtccatatcaactgagctaagctcac 27718955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 27750916 - 27750965
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| |||| ||| ||||||| ||||||||||    
T  27750916 cggaccttgcatatattatgcactgtccttaccaactgagctaagctcac 27750965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 30623340 - 30623287
Alignment:
Q  32 gaccttgcatatgttatgcaatgtctttatcaactgaactaagctcacacggac 85  Q
    |||||||||||| ||||||| |||| ||| ||||||| ||||||||||| ||||    
T  30623340 gaccttgcatatattatgcattgtccttaccaactgagctaagctcacagggac 30623287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 11771758 - 11771710
Alignment:
Q  28 ctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagct 76  Q
    |||||||||||||||| ||||| | ||||| |||||||||| |||||||    
T  11771758 ctcggaccttgcatatattatgtattgtctctatcaactgagctaagct 11771710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 43962025 - 43962081
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagc 75  Q
    ||||||||| ||||||||||||||| ||||| | |||| ||| ||||||| ||||||    
T  43962025 ggttcaaatttcggaccttgcatatattatgtattgtccttaccaactgagctaagc 43962081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 3113734 - 3113785
Alignment:
Q  25 aatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagct 76  Q
    |||| |||||||||||||| ||||||| |||| |||||||||||||||||||    
T  3113734 aatcccggaccttgcatattttatgcattgtccttatcaactgaactaagct 3113785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 7206185 - 7206125
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||| ||| |||||||||||||||| ||||||| ||||| || ||||||| ||||||||||    
T  7206185 ggtttaaacctcggaccttgcatatattatgcattgtctctaccaactgagctaagctcac 7206125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 39068709 - 39068769
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||| | |||| ||||||||| ||||||| |||| ||||||||||| ||||||||||    
T  39068709 ggttcaaaccccggatcttgcatatattatgcattgtccttatcaactgagctaagctcac 39068769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 34903577 - 34903518
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctca 78  Q
    ||||| || ||| |||||||||||| ||||||| |||| ||| |||||||||||||||||    
T  34903577 ggttcgaacctcagaccttgcatatattatgcactgtccttaccaactgaactaagctca 34903518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 13000746 - 13000684
Alignment:
Q  18 aggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    ||||| ||| |||||||||| ||||| ||||||| | |||||| ||||||| |||||||||||    
T  13000746 aggtttaaacctcggaccttacatatattatgcattatctttaccaactgagctaagctcaca 13000684  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 29734740 - 29734682
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcacacggacgat 88  Q
    |||||||||||||| ||||||| ||||  |||||||||| |||| |||||| |||||||    
T  29734740 cggaccttgcatatattatgcattgtccatatcaactgagctaaactcacaaggacgat 29734682  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 4056839 - 4056782
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcacacggacga 87  Q
    |||||||||||||| ||||||| |||| ||| |||| || ||||||||||| ||||||    
T  4056839 cggaccttgcatatattatgcattgtccttaccaaccgagctaagctcacagggacga 4056782  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 16204831 - 16204884
Alignment:
Q  32 gaccttgcatatgttatgcaatgtctttatcaactgaactaagctcacacggac 85  Q
    |||||||||||| ||||||| |||| |||||||||||  |||||||||| ||||    
T  16204831 gaccttgcatatattatgcattgtccttatcaactgagttaagctcacagggac 16204884  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 24593425 - 24593376
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| |||| ||| ||||||| ||||||||||    
T  24593425 cggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 24593376  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 27411141 - 27411092
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| |||||||| |||  |||||||||| ||||||||||    
T  27411141 cggaccttgcatatattatgcaaggtccatatcaactgagctaagctcac 27411092  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 33064035 - 33063986
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| ||||  |||||||||| ||||||||||    
T  33064035 cggaccttgcatatattatgcattgtccatatcaactgagctaagctcac 33063986  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 37320509 - 37320578
Alignment:
Q  10 ggtgcccaaggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||| ||| ||||| || |||| ||||||||||| ||||||| |||||||| |||||||  |||||||||    
T  37320509 ggtgtccatggttcgaacctcgaaccttgcatatattatgcattgtctttaccaactgagttaagctcac 37320578  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 24393305 - 24393245
Alignment:
Q  19 ggttcaaatctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    ||||| || ||| |||||||||||| ||||||| |||| ||| ||||||| ||||||||||    
T  24393305 ggttcgaacctcagaccttgcatatattatgcattgtccttaacaactgagctaagctcac 24393245  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 8615075 - 8615022
Alignment:
Q  27 tctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    ||||||||||||||||| ||||||| |||| ||| ||||||| |||||||||||    
T  8615075 tctcggaccttgcatatattatgcattgtccttaccaactgagctaagctcaca 8615022  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 38858182 - 38858233
Alignment:
Q  28 ctcggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||| ||||| ||||||| |||||||| ||| ||||||||||||||    
T  38858182 ctcggaccttacatatattatgcactgtctttaccaattgaactaagctcac 38858233  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 46987135 - 46987086
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| |||| ||| ||||||| ||||||||||    
T  46987135 cggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 46987086  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 48527239 - 48527190
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    |||||||||||||| ||||||| |||| |||||||||||  |||||||||    
T  48527239 cggaccttgcatatattatgcattgtccttatcaactgagataagctcac 48527190  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 25246815 - 25246771
Alignment:
Q  35 cttgcatatgttatgcaatgtctttatcaactgaactaagctcac 79  Q
    ||||||||| ||||||| |||||||||||||||| |||| |||||    
T  25246815 cttgcatatattatgcattgtctttatcaactgagctaaactcac 25246771  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 9274709 - 9274746
Alignment:
Q  37 tgcatatgttatgcaatgtctttatcaactgaactaag 74  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  9274709 tgcatatattatgcaatgtctttatcaactgagctaag 9274746  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 25917599 - 25917647
Alignment:
Q  32 gaccttgcatatgttatgcaatgtctttatcaactgaactaagctcaca 80  Q
    |||||||||||| ||||||| |||| || | ||||||||||||||||||    
T  25917599 gaccttgcatatattatgcattgtccttgtaaactgaactaagctcaca 25917647  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 28266765 - 28266717
Alignment:
Q  30 cggaccttgcatatgttatgcaatgtctttatcaactgaactaagctca 78  Q
    |||||||||||||| ||||||| |||| ||| |||||||||||| ||||    
T  28266765 cggaccttgcatatattatgcattgtccttaccaactgaactaacctca 28266717  T

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