View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18575_low_17 (Length: 470)

Name: NF18575_low_17
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18575_low_17
NF18575_low_17
[»] chr5 (1 HSPs)
chr5 (14-453)||(2621834-2622273)
[»] chr8 (1 HSPs)
chr8 (279-453)||(41316639-41316813)
[»] chr4 (3 HSPs)
chr4 (213-260)||(37214236-37214283)
chr4 (213-260)||(41356622-41356669)
chr4 (224-257)||(44565147-44565180)
[»] chr7 (6 HSPs)
chr7 (214-259)||(1481875-1481920)
chr7 (213-261)||(41756892-41756940)
chr7 (229-260)||(34732588-34732619)
chr7 (123-157)||(1481883-1481917)
chr7 (213-259)||(34728641-34728686)
chr7 (225-262)||(45518928-45518965)
[»] chr3 (1 HSPs)
chr3 (224-255)||(34573183-34573214)
[»] chr2 (1 HSPs)
chr2 (212-248)||(40207973-40208009)


Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 14 - 453
Target Start/End: Complemental strand, 2622273 - 2621834
Alignment:
Q  14 atatttaatatataaagccacaattaggtaacatattaatttccaaaacacactcaaaacaagttggaacttatagaagctaaacattactaataacatg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2622273 atatttaatatataaagccacaattaggtaacatattaatttccaaaacacactcaaaacaagttggaacttatagaagctaaacattactaataacatg 2622174  T
Q  114 ctcgtatatttagttgaatattgtttaacatagttacaagttagctaagattagttagaattagttgaatttactatcctacactaattcaaactggtaa 213  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2622173 ctcgtatatttagttgaatattgtttaacgtagttacaagttagctaagattagttagaattagttgaatttactatcctacactaattcgaactggtaa 2622074  T
Q  214 taactaactcgtaactaccttaaacaatattcaactaattctaacaatatcagagaagaagaacgtactctatcccatagatgcgggtctggcttcttat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2622073 taactaactcgtaactaccttaaacaatattcaactaattctaacaatatcagagaagaagaacgtactctatcccatagatgcgggtctggcttcttat 2621974  T
Q  314 atacgacaactttgtcaagagcagaaggattagccattttccatcggcattccggatgaggaacacgatgtttttcatattcactcactgtctgttgtat 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621973 atacgacaactttgtcaagagcagaaggattagccattttccatcggcattccggatgaggaacacgatgtttttcatattcactcactgtctgttgtat 2621874  T
Q  414 tgtagaattgaattttgcttttgaaaggtaaaacacaaaa 453  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2621873 tgtagaattgaattttgcttttgaaaggtaaaacacaaaa 2621834  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 279 - 453
Target Start/End: Original strand, 41316639 - 41316813
Alignment:
Q  279 tactctatcccatagatgcgggtctggcttcttatatacgacaactttgtcaagagcagaaggattagccattttccatcggcattccggatgaggaaca 378  Q
    |||||||||||||||||| || |||||||||||||||||  | ||| |||||| || ||||||||| ||||| ||||| |||||||| || |||||||||    
T  41316639 tactctatcccatagatgtggatctggcttcttatatacctccactctgtcaacagaagaaggattggccatcttccaccggcattctgggtgaggaaca 41316738  T
Q  379 cgatgtttttcatattcactcactgtctgttgtattgtagaattgaattttgcttttgaaaggtaaaacacaaaa 453  Q
    |||||  ||||||||||| ||| ||| |||| | |||||  |||| ||||||| ||||| | |||||| ||||||    
T  41316739 cgatgcctttcatattcagtcagtgtttgttctgttgtatcattgtattttgcctttgagaagtaaaatacaaaa 41316813  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 37214283 - 37214236
Alignment:
Q  213 ataactaactcgtaactaccttaaacaatattcaactaattctaacaa 260  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||||    
T  37214283 ataactaacttttaactaccttaaacaatatccaactaattctaacaa 37214236  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 41356669 - 41356622
Alignment:
Q  213 ataactaactcgtaactaccttaaacaatattcaactaattctaacaa 260  Q
    |||||||||| ||||| | ||||||||||||||||| |||||||||||    
T  41356669 ataactaacttgtaacgaacttaaacaatattcaacgaattctaacaa 41356622  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 44565180 - 44565147
Alignment:
Q  224 gtaactaccttaaacaatattcaactaattctaa 257  Q
    |||||||||||||| |||||||||||||||||||    
T  44565180 gtaactaccttaaataatattcaactaattctaa 44565147  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 1481920 - 1481875
Alignment:
Q  214 taactaactcgtaactaccttaaacaatattcaactaattctaaca 259  Q
    ||||||||| ||||||| |||||||||||||||||||||| |||||    
T  1481920 taactaacttgtaactatcttaaacaatattcaactaattttaaca 1481875  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 41756940 - 41756892
Alignment:
Q  213 ataactaactcgtaactaccttaaacaatattcaactaattctaacaat 261  Q
    |||||||||| |||||||||| ||||||||||||||| || ||||||||    
T  41756940 ataactaacttgtaactacctcaaacaatattcaactgatcctaacaat 41756892  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 260
Target Start/End: Complemental strand, 34732619 - 34732588
Alignment:
Q  229 taccttaaacaatattcaactaattctaacaa 260  Q
    ||||||||||||||||||||||||||||||||    
T  34732619 taccttaaacaatattcaactaattctaacaa 34732588  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 1481883 - 1481917
Alignment:
Q  123 ttagttgaatattgtttaacatagttacaagttag 157  Q
    ||||||||||||||||||| |||||||||||||||    
T  1481883 ttagttgaatattgtttaagatagttacaagttag 1481917  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 34728686 - 34728641
Alignment:
Q  213 ataactaactcgtaactaccttaaacaatattcaactaattctaaca 259  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||    
T  34728686 ataactaacatgtaactac-ttaaacaatattcaactaattctaaca 34728641  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 45518928 - 45518965
Alignment:
Q  225 taactaccttaaacaatattcaactaattctaacaata 262  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  45518928 taactaccttaaacattattcaactaattctgacaata 45518965  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 255
Target Start/End: Original strand, 34573183 - 34573214
Alignment:
Q  224 gtaactaccttaaacaatattcaactaattct 255  Q
    ||||||||||||||||||||||||||||||||    
T  34573183 gtaactaccttaaacaatattcaactaattct 34573214  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 40207973 - 40208009
Alignment:
Q  212 aataactaactcgtaactaccttaaacaatattcaac 248  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  40207973 aataactaacttgtaactaccttaaacaacattcaac 40208009  T

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