View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_18 (Length: 470)
Name: NF18575_low_18
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 454
Target Start/End: Original strand, 6916944 - 6917393
Alignment:
| Q |
15 |
atcatggcaggcttcttgtatattgttccggtctggccaaaagggcggccatatccaagtcctttcaacaatttggagttcattgattcattctgaatta |
114 |
Q |
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| T |
6916944 |
atcatggcaggcttcttgtatattgttccggtctggccaaaagggcgaccatatccaagtcctttcaacaatttggagttcattgattcattctgaatta |
6917043 |
T |
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| Q |
115 |
tcaccttcacaaagctaaggtttagaaacagtcacacagtgacagacgcagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaatt |
214 |
Q |
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| T |
6917044 |
tcaccttcacaaagctaaggtctagaaacagtcacacagtgacagacgcagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaatt |
6917143 |
T |
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| Q |
215 |
cagtttagcatcattcacggcggcgacagtgaagtctccgttgaaccgccttcattagtcaaagct-------cgccattgacagcaccccgagtttccc |
307 |
Q |
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| T |
6917144 |
cagtttagcatcattcacggcggcgacagtgaagtctccgccaaaccgccttcattagtcaaagctcgagcagcgccattgacagcacgccgagtttccc |
6917243 |
T |
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| Q |
308 |
atggacacgctcagagattgatcctgaagccgcagcagtttgagacgagtccgctcccgtatctggcaatcagtttgagctgtgctgtgctcgtggaagc |
407 |
Q |
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| T |
6917244 |
acagacacgctcagagattgatcctgaagccgcagcagtttgagacgagtctgctcccgtatctggcaaacagtttgagctgtgccatgctcgtggaagc |
6917343 |
T |
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| Q |
408 |
ctagccgcccaggaga--ccgcccaagaatt-atctgaagccgtgttcgt |
454 |
Q |
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| T |
6917344 |
gtagccacccaggagaggccgcccaagaattgatctgaagccgtgttcgt |
6917393 |
T |
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