View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18575_low_19 (Length: 455)

Name: NF18575_low_19
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18575_low_19
NF18575_low_19
[»] chr5 (7 HSPs)
chr5 (1-309)||(13518880-13519186)
chr5 (1-309)||(13553674-13553980)
chr5 (372-455)||(13554039-13554122)
chr5 (26-160)||(13540281-13540425)
chr5 (372-455)||(13519249-13519339)
chr5 (216-309)||(13540493-13540580)
chr5 (216-306)||(13587889-13587977)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 13518880 - 13519186
Alignment:
Q  1 ccacaactgcaaaccaaccctatggtggctgcttcatcaccgtttgctgtgatccaagagcattatcgccgctttctaaggtttgcttgcatggaggtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13518880 ccacaactgcaaaccaaccctatggtggctgcttcatcaccgtttgctgtgatccaagagcattatcgccgctttctaaggtttgcttgcatggaggtag 13518979  T
Q  101 tcagagcaatcattggattaagtgttggagcgttactcgtatgtgcttttgaatcttcttactacttctcattaaatcctttttatttaaaactaatcga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||      |  ||||||||||||||||||||||||||||||||||||||||||    
T  13518980 tcagagcaatcattggattaagtgttggagcgttactcgtatgtgctttccttgttagttactacttctcattaaatcctttttatttaaaactaatcga 13519079  T
Q  201 tcgtgtc-nnnnnnnncagacatatcttttcttgaagaacaagaaataatagcttgctggtagagtgggagtgtccgagccttaccgtagatcaattgtt 299  Q
    |||||||         ||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  13519080 tcgtgtcttcttatttcagacatatcttttcttgaagaacaaga---aatagctagctggtagagtgggagtgtccgagccttaccgtagattaattgtt 13519176  T
Q  300 ttcaagcatt 309  Q
    ||||||||||    
T  13519177 ttcaagcatt 13519186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 13553674 - 13553980
Alignment:
Q  1 ccacaactgcaaaccaaccctatggtggctgcttcatcaccgtttgctgtgatccaagagcattatcgccgctttctaaggtttgcttgcatggaggtag 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  13553674 ccacagctgcaaaccaaccctatggtggctgcttcatcaccgtttgctgtgatccaagagcactatcgccgcttgctaaggtttgcttgcatggaggtag 13553773  T
Q  101 tcagagcaatcattggattaagtgttggagcgttactcgtatgtgcttttgaatcttcttactacttctcattaaatcctttttatttaaaactaatcga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||      |  ||||||||||||||||||||||||||||||||||||||||||    
T  13553774 tcagagcaatcattggattaagtgttggagcgttactcgtatgtgctttccttgttagttactacttctcattaaatcctttttatttaaaactaatcga 13553873  T
Q  201 tcgtgtc-nnnnnnnncagacatatcttttcttgaagaacaagaaataatagcttgctggtagagtgggagtgtccgagccttaccgtagatcaattgtt 299  Q
    |||||||         ||||||||||||||||||||||||||||   ||||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  13553874 tcgtgtcttcttttttcagacatatcttttcttgaagaacaaga---aatagcttgctggtagagtgggaatgtccgggccttaccgtagattaattgtt 13553970  T
Q  300 ttcaagcatt 309  Q
    ||||||||||    
T  13553971 ttcaagcatt 13553980  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 372 - 455
Target Start/End: Original strand, 13554039 - 13554122
Alignment:
Q  372 gtgtaatttcaatttcagttatatatgaaggtgaggctttggtaatttatcaataagcattgttttattttcaaaactgtttat 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13554039 gtgtaatttcaatttcagttatatatgaaggtgaggctttggtaatttatcaataagcattgttttattttcaaaactgtttat 13554122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 13540281 - 13540425
Alignment:
Q  26 tggctgcttcatcaccgtttgctgtgatccaa------gagcattatcgccgctttctaaggtttgcttgcatggaggtagtcagagcaatcattggatt 119  Q
    ||||||||||||||||||||||||||||||||      ||| | | ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||    
T  13540281 tggctgcttcatcaccgtttgctgtgatccaactccaagagtactgtcgccgctttcgaaggtttgtttgcatggaggtagtcagagcaaccattggatt 13540380  T
Q  120 aagtgttggagcgttactcgtat----gtgcttttgaatcttctt 160  Q
    | ||||||||||||| || ||||    ||||||||||||||||||    
T  13540381 aggtgttggagcgttgctggtatatacgtgcttttgaatcttctt 13540425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 372 - 455
Target Start/End: Original strand, 13519249 - 13519339
Alignment:
Q  372 gtgtaatttcaatttcagttata----tatgaaggtgaggctttggtaatttat---caataagcattgttttattttcaaaactgtttat 455  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||   |||| || ||||||||||||||||||||||||||    
T  13519249 gtgtaatttcaatttcagttatatatatatgaaggtgaggctttggtaatttatcaacaatgagaattgttttattttcaaaactgtttat 13519339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 309
Target Start/End: Original strand, 13540493 - 13540580
Alignment:
Q  216 cagacatatcttttcttgaagaacaagaaataatagcttgctggtagagtgggagtgtccgagccttaccgtagatcaattgttttcaagcatt 309  Q
    ||||||||||||||||||||||| |||      ||||||| |||||||| ||||||||||||||||| || ||||| | |||||||||| ||||    
T  13540493 cagacatatcttttcttgaagaagaag------tagcttgttggtagagggggagtgtccgagccttgccatagattagttgttttcaaacatt 13540580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 13587889 - 13587977
Alignment:
Q  216 cagacatatcttttcttgaagaacaagaaataatagcttgctggtagagtgggagtgtccgag-ccttaccgtagatcaattgttttcaagc 306  Q
    |||||||||||||| | |||||||||||| ||   |||||||||| ||||||||||||||||| | || |||||||| | ||||||||||||    
T  13587889 cagacatatcttttgtcgaagaacaagaagta---gcttgctggttgagtgggagtgtccgagtctttgccgtagattagttgttttcaagc 13587977  T

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