View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18575_low_2 (Length: 929)
Name: NF18575_low_2
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 778; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 28 - 922
Target Start/End: Original strand, 50909285 - 50910153
Alignment:
| Q |
28 |
ataatttgcacagtaaaaggtccaaaataagtttcttccttcagcaacaacacaacagatcaggtaagagaattagtaaaaactagtcaactgcttgctt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50909285 |
ataatttgcacagtaaaaggtccaaaataagtttcttccttcagcaacaacacaacagatcaggtaagagaattagtaaaaactagtcaactgcttgc-- |
50909382 |
T |
|
| Q |
128 |
gcacacatagaaaatgtggtctccacttgtttgaacttgagattcagcatagagacgcatacactatggcagcatatttcaacgagaaaactgaatttca |
227 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50909383 |
----acacagaaaatgtggtctcaacttgtttgaacttgagattcagcatagagacgcatacactatggcagcatatttcaacgagaaaagtgaatttca |
50909478 |
T |
|
| Q |
228 |
cgcattcgaatttcaaagtccggatgtgtaaaagtcttaaaaaatgtattttacacaaagattttgaaatttgaatatgttaaaaattatgaatttgcac |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50909479 |
cgcattcgaatttcaaagtccggatgtgtaaaagtcttaaaaaatgtattttacacaaagattttgaaatttgaatatgttaaaaattatgaatttgcac |
50909578 |
T |
|
| Q |
328 |
tttgtcacaatagaagtttgaactatatatatggcaccttcaaactccaaaatcaagatgtgtaagaattaagattgatttataaatcaattttgggggc |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
50909579 |
tttgtcacaatagaagtttgaactatatatatggcaccttcaaactccaaaatcaagatgtgtaagaattaagattgatttataaatcaatttgggggac |
50909678 |
T |
|
| Q |
428 |
gcacgagatgtaaggggtggaagaaaaatttcatgtcgttgtgtcatagatttatttaacttgaaaataggctaaacacatccacgattaaacccaaccc |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
50909679 |
gcacgagatgtaaggggtggaagaaaaatttcatgtcgttgtgtcatag----atttaacttgaaaataggc----------------taaacccaaccc |
50909758 |
T |
|
| Q |
528 |
aattcaaaagagacataaacaaaagtacacctacgctacgcaaggtcttgctaaagtgtgagtaaatttgaaaatatggctactctaatacaatttagca |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50909759 |
aattcaaaagagacataaacaaaagtacacctacgctacgcaagctcttgctaaagtgtgagtaaatttgaaaatatggctactctaatacaatttagca |
50909858 |
T |
|
| Q |
628 |
ataatgcatggtaataattcaaaaagaggatcaagtaatacgatgacttcatctatctatgtagtattgttggaacaagagttagaaaaacatagtgttc |
727 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50909859 |
ataatgcatggtaataattcaaaaagaggatcaagtaatacgatgacttcatctatctatgtagtattgttggaacaagagttagaaaaacatagtgttc |
50909958 |
T |
|
| Q |
728 |
caacaagtattaatctattagacgcgtctttactgctttgggatggctaatacttaattgttgctggaacaggagccagttcttccaggttcctttccct |
827 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50909959 |
caacaagtattaatctattagacgcgtctttactgctttgggatggctaatacttaattgttgctggaacaggagccagttcttccaggttcctttccct |
50910058 |
T |
|
| Q |
828 |
tacgaagttcagggcgagaaagatgacaagatattcgctgtctgtgcatgaaattcagggcaagaaagacgacaagatattcgctgtctgtgctg |
922 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50910059 |
tacgaagttcagggcgagaaagatgacaagatattcgctgtctgtgcatgaaattcagggcaagaaagacgacaagatattcgctgtctgtgctg |
50910153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 726 - 824
Target Start/End: Original strand, 50901041 - 50901143
Alignment:
| Q |
726 |
tccaacaagtattaatctattagacgcgtctt---tactgctttgggatggctaatacttaattgttgctggaaca-ggagccagttcttccaggttcct |
821 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| || |
|
|
| T |
50901041 |
tccaccaagtattaatctattagatgtgtcttctttactgctttgggatggctaatacttaattgttggtggaacagggagccggttcttccaggttgct |
50901140 |
T |
|
| Q |
822 |
ttc |
824 |
Q |
| |
|
||| |
|
|
| T |
50901141 |
ttc |
50901143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 686
Target Start/End: Original strand, 43548535 - 43548637
Alignment:
| Q |
584 |
tgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataattcaaaaagaggatcaagtaatacgatgacttcatctat |
683 |
Q |
| |
|
||||||||||||| ||||||| || |||||||||||| | ||||||||||||| || |||||| |||||||||||||||| | | |||||||||||| |
|
|
| T |
43548535 |
tgtgagtaaatttcaaaatattactcctctaatacaatctgacaataatgcatggaaacaattcataaagaggatcaagtaagaagtcgacttcatctat |
43548634 |
T |
|
| Q |
684 |
cta |
686 |
Q |
| |
|
||| |
|
|
| T |
43548635 |
cta |
43548637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 584 - 666
Target Start/End: Original strand, 29368771 - 29368852
Alignment:
| Q |
584 |
tgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataattcaaaaagaggatcaagtaat |
666 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||||||||| ||||||| |||||||| | |||||||||||||| ||||||| |
|
|
| T |
29368771 |
tgtgagtaaattttaaaa-atggctactgtaatacaatttcacaataatacatggtaacacttcaaaaagaggatgaagtaat |
29368852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 834 - 874
Target Start/End: Original strand, 43548853 - 43548893
Alignment:
| Q |
834 |
gttcagggcgagaaagatgacaagatattcgctgtctgtgc |
874 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
43548853 |
gttcagggcgagaaagatgacaagataattgctgtctgtgc |
43548893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 836 - 874
Target Start/End: Original strand, 50901265 - 50901303
Alignment:
| Q |
836 |
tcagggcgagaaagatgacaagatattcgctgtctgtgc |
874 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
50901265 |
tcagggcgagaaagatgacaagataattgctgtctgtgc |
50901303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University