View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_23 (Length: 381)
Name: NF18575_low_23
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 41209595 - 41209244
Alignment:
| Q |
13 |
aatattctgtgtataaacattcggatcatatactatgtcgcgtttattttaatcttatctataacttttaattggttgtgtctataaaaactgtgctcac |
112 |
Q |
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| T |
41209595 |
aatattctgtgtataaacatttggatcatatactatgtcgagtttatgttaatcttatctataacttttaattggttgtgtctataaaaactgtgctcac |
41209496 |
T |
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| Q |
113 |
acaagaattgttctaggagcatattcatgagttgcttgttgactgcatatttttccttcttctactaaataacagaaattttctacaatcgtatattttt |
212 |
Q |
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| T |
41209495 |
acaagaattgttctaggagaatattcatgagttgcttgttgactgcatatttttccttcttctactaaataacagaaattttctacaatcatatattttt |
41209396 |
T |
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| Q |
213 |
aagaagtctaatgaatataaattcttttgatcctcagacaaagacaagaaccaactaaatttcttttgatgctaaaatatgttctgttatgcttcctgct |
312 |
Q |
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| T |
41209395 |
aagaagtctaatgaatataaattcttttgatcctcagacaaagacaagaaccaactaaatttcttttgatgctaaaatatgttctgttatgcttcctgct |
41209296 |
T |
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| Q |
313 |
atatgcatactaattgcaaccatcaaactgttatacttgaacagaacataat |
364 |
Q |
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| T |
41209295 |
atatgcatactaattgcaaccatcaaactgttatacttgaacagaacataat |
41209244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 41199349 - 41199283
Alignment:
| Q |
284 |
ctaaaatatgttctgttatgcttcctgctatatgcatactaattgcaaccatcaaactgttatactt |
350 |
Q |
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| T |
41199349 |
ctaaaatctgttctgtcatgcttcctgctacacgcatactaattgctaccatcaggctgatatactt |
41199283 |
T |
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