View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_24 (Length: 375)
Name: NF18575_low_24
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 123 - 361
Target Start/End: Original strand, 33173182 - 33173420
Alignment:
| Q |
123 |
gcttacaacaagagttcaaatcacatttccaattttcaacaaagcatcaaactgaatannnnnnnaactgtatcaaaccgaatcactaatatctacaata |
222 |
Q |
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| T |
33173182 |
gcttacaacaagagttcaaatcacatttccaattttcaacaaagcatcaaactgaatatttttttaactgtatcaaaccgaatcactaatatctacaata |
33173281 |
T |
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| Q |
223 |
ttcatcaaacttatttaacactaaaaacatcacgagctagcctttgaaacccatcaaactgaatcatccatcaatcactacaaaattcatcatgacttgc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33173282 |
ttcatcaaacttatttaacactaaaaacatcacgagctagcctttgaaacccatcaaactgaatcatccatcaatcactacaaaattcatcatgacttgc |
33173381 |
T |
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| Q |
323 |
accaaacggcatcgcttctcaataaacaatctcactgat |
361 |
Q |
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||||||| ||||| || |||||||||||||||||||||| |
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| T |
33173382 |
accaaactgcatccctcctcaataaacaatctcactgat |
33173420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 33173065 - 33173157
Alignment:
| Q |
20 |
tagtgctcatatatttttgcccaatgtggcactcaacaccttatttgaagcctgttgtaatatatgacgatggtgttgttaaattagcttctt |
112 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33173065 |
tagtgctcatatgtttttgcccaatgtggcactcaacaccttatttgcagcctgttgtaatatatgacgatggtgttgttaaattagcttctt |
33173157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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