View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_26 (Length: 354)
Name: NF18575_low_26
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 41786346 - 41786008
Alignment:
| Q |
1 |
cactttggtaatcaggcctattgtgccaccatattttttaaactggctaaaatcaaaaattgaaaggggtaaagtaagaaaaacaataatagaatgaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41786346 |
cactttggtaatcaggcctattgtgccaccatattttttaaactggctaaaatcaaaaattgaaaggggtaaagtaagaaaaacaataatagaatgaatc |
41786247 |
T |
|
| Q |
101 |
atttttcaattttacaaaacttaggagtattggtttccaatgactccatctccatgtacaataataagcagaaaaaagaaagttcatgtcttcttattaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41786246 |
atttttcaattttacaaaacttaggagtattggtttccaatgactccatctccatgtacaataataagcagaaaaaagaaagttcatgtcttcttattaa |
41786147 |
T |
|
| Q |
201 |
ctctcatacttgcgaccaaattcattagatagttaaaccggtcgcgatgaaactcaacaaccaaacaaagctgtcttattgcttccctcttcttctcccc |
300 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41786146 |
ctctcatacttgtgaccaaattcattagatagttacaccggtcgcgatgaaactcaacaaccaaacaaagctgtcttattgcttccctcttcttctcccc |
41786047 |
T |
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| Q |
301 |
aaggctatccaaatcctcatccttttctttcagattctt |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
41786046 |
aaggctatccaaatcctcatccttttctttcagattctt |
41786008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 339
Target Start/End: Original strand, 2281207 - 2281301
Alignment:
| Q |
245 |
cgatgaaactcaacaaccaaacaaagctgtcttattgcttccctcttcttctccccaaggctatccaaatcctcatccttttctttcagattctt |
339 |
Q |
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|||||||| ||||| | ||||||||||| |||||||||||| |||| ||||| |||||||| ||| || |||||||| | |||||| ||||| |
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| T |
2281207 |
cgatgaaagtcaaccaaaaaacaaagctgccttattgcttccttcttgttctctgcaaggctagccagttcatcatccttctgtttcagtttctt |
2281301 |
T |
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