View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_28 (Length: 338)
Name: NF18575_low_28
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 100 - 324
Target Start/End: Complemental strand, 55480943 - 55480720
Alignment:
| Q |
100 |
tccattacaattttgaataaatcatttgtgtcaatgataagggccccttacacattatgaaaaagggaattatttgtgccaattatcttccgatttcatt |
199 |
Q |
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| T |
55480943 |
tccattacaatttagaataaatcatttgtgtcaatgataagggccccttatacattatgaaaaagggaattatttgtgccaattatcttccgatttcatt |
55480844 |
T |
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| Q |
200 |
tctgctcttcttccttcatttatgaaaaaaggggcccttatacattaagaacagctgggttatttgtgccaattcacgtgaaatctgtttagcaagagaa |
299 |
Q |
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| T |
55480843 |
tctgctcttcttccttcatttatga-aaaaggggcccttatacattaagaacagctgggttatttgtgccaattcacgtgaaatctgtttagcaagagaa |
55480745 |
T |
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| Q |
300 |
ttatttgaacagctgggttatttct |
324 |
Q |
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| T |
55480744 |
ttatttgaacagctgggttatttct |
55480720 |
T |
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