View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18575_low_30 (Length: 318)

Name: NF18575_low_30
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18575_low_30
NF18575_low_30
[»] chr1 (2 HSPs)
chr1 (1-318)||(31321952-31322274)
chr1 (1-76)||(31321372-31321447)
[»] chr4 (2 HSPs)
chr4 (72-155)||(42602474-42602557)
chr4 (195-267)||(42602141-42602213)
[»] chr8 (2 HSPs)
chr8 (1-77)||(2687496-2687573)
chr8 (13-62)||(27824119-27824168)
[»] chr5 (2 HSPs)
chr5 (1-76)||(37498509-37498584)
chr5 (7-53)||(13163522-13163568)
[»] chr6 (1 HSPs)
chr6 (27-77)||(28636113-28636163)
[»] chr7 (2 HSPs)
chr7 (13-67)||(28686816-28686870)
chr7 (1-37)||(3697908-3697944)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 31322274 - 31321952
Alignment:
Q  1 catttctgctataaattcacatata--gatcataaaactgtaaaattctcatgatttccacaaaagtatggttctttttggttctcattcgtaacaccaa 98  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31322274 catttctgctataaattcacatatatagatcataaaactgtaaaattctcatgatttccacaaaagcatggttctttttggttctcattcgtaacaccaa 31322175  T
Q  99 tcctacaattgttgttatggcagaataataagtggaacaaattgaggcaaggttggatagaggagatgcttgatagggag---attaggaaaagtgttat 195  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||    
T  31322174 tcctacaattgttgttatggcagaacaataagtggaacaaattgaggcaaggttggatagaggagatgcttgatagggagataataaggaaaagtgttat 31322075  T
Q  196 gttgaagatgtattcttgtgataattatggtgttcagaagtaggagaaggaaggagcaaaaacacttgcttttgattggttttattttatcaacctctgt 295  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31322074 gttgaagatgtatttttgtgataattatggtgttcagaagtaggagaaggaaggagcaaaaacacttgcttttgattggttttattttatcaacccctgt 31321975  T
Q  296 acatagtatatattcttcgacat 318  Q
    ||||||||||| ||||| |||||    
T  31321974 acatagtatatcttcttggacat 31321952  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 31321372 - 31321447
Alignment:
Q  1 catttctgctataaattcacatatagatcataaaactgtaaaattctcatgatttccacaaaagtatggttctttt 76  Q
    |||||||| || || |||||| ||||||||||||||| ||||||| || |||||| |||||||| |||||||||||    
T  31321372 catttctgttaaaatttcacagatagatcataaaactataaaattttcgtgattttcacaaaagcatggttctttt 31321447  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 42602557 - 42602474
Alignment:
Q  72 ctttttggttctcattcgtaacaccaatcctacaattgttgttatggcagaataataagtggaacaaattgaggcaaggttgga 155  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||||  || ||| |||||| | |||||||||||||||    
T  42602557 ctttttgggcctcattcgtagcaccaatcctacaattgttgttatggcagagcaagaagcggaacacaatgaggcaaggttgga 42602474  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 42602213 - 42602141
Alignment:
Q  195 tgttgaagatgtattcttgtgataattatggtgttcagaagtaggagaaggaaggagcaaaaacacttgcttt 267  Q
    ||||||| ||||||||||||||||||||  ||||||||||| ||||| |||||||||||| | ||||| ||||    
T  42602213 tgttgaaaatgtattcttgtgataattacagtgttcagaagcaggagcaggaaggagcaacagcacttacttt 42602141  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2687496 - 2687573
Alignment:
Q  1 catttctgctataaattcacatatagatcataaaactgtaaaattctcatgatttccac-aaaagtatggttcttttt 77  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||    
T  2687496 catttctgctaaaaattcatacatagatcataaaactgtaaaattcccatgattttcacaaaaagcatggttcttttt 2687573  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 27824168 - 27824119
Alignment:
Q  13 aaattcacatatagatcataaaactgtaaaattctcatgatttccacaaa 62  Q
    ||||||||| ||||||||||| ||| ||||||||||||||| || |||||    
T  27824168 aaattcacaaatagatcataatactttaaaattctcatgatatctacaaa 27824119  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37498584 - 37498509
Alignment:
Q  1 catttctgctataaattcacatatagatcataaaactgtaaaattctcatgatttccacaaaagtatggttctttt 76  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||| |||||||| |||||||  ||| |||||||    
T  37498584 catttatgctaaaaattcacaaatagatcataaaactgtaaaattcccatgattttcacaaaaacatgcttctttt 37498509  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 13163568 - 13163522
Alignment:
Q  7 tgctataaattcacatatagatcataaaactgtaaaattctcatgat 53  Q
    ||||| ||||||||||||||||||||||||| |||||||| ||||||    
T  13163568 tgctaaaaattcacatatagatcataaaactttaaaattcacatgat 13163522  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 28636163 - 28636113
Alignment:
Q  27 atcataaaactgtaaaattctcatgatttccacaaaagtatggttcttttt 77  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||| |||||    
T  28636163 atcataaaactataaaattcccatgatttccacaaaagtatagtttttttt 28636113  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 28686816 - 28686870
Alignment:
Q  13 aaattcacatatagatcataaaactgtaaaattctcatgatttccacaaaagtat 67  Q
    |||||| || || ||||||||||||||||||||  |||||||||| |||||||||    
T  28686816 aaattcgcagatggatcataaaactgtaaaatttccatgatttcctcaaaagtat 28686870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3697908 - 3697944
Alignment:
Q  1 catttctgctataaattcacatatagatcataaaact 37  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  3697908 catttctgctaaaaattcacagatagatcataaaact 3697944  T

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