View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18575_low_33 (Length: 311)

Name: NF18575_low_33
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18575_low_33
NF18575_low_33
[»] chr6 (6 HSPs)
chr6 (6-311)||(26854055-26854360)
chr6 (119-190)||(24062813-24062884)
chr6 (120-190)||(33573668-33573738)
chr6 (115-191)||(13698490-13698566)
chr6 (122-190)||(28592866-28592934)
chr6 (119-190)||(9894219-9894290)
[»] chr1 (14 HSPs)
chr1 (118-190)||(37705630-37705702)
chr1 (120-190)||(47402437-47402507)
chr1 (113-186)||(9398168-9398240)
chr1 (120-189)||(34749026-34749094)
chr1 (134-190)||(5965559-5965615)
chr1 (120-187)||(650120-650187)
chr1 (120-191)||(1580999-1581070)
chr1 (123-190)||(34011016-34011083)
chr1 (119-189)||(44645080-44645150)
chr1 (119-189)||(44648438-44648508)
chr1 (117-190)||(10729219-10729292)
chr1 (118-190)||(8273491-8273563)
chr1 (154-190)||(20906970-20907006)
chr1 (160-204)||(52043568-52043612)
[»] chr7 (19 HSPs)
chr7 (120-190)||(27513150-27513220)
chr7 (119-190)||(10040607-10040678)
chr7 (118-190)||(15646928-15647000)
chr7 (120-190)||(5800451-5800521)
chr7 (120-190)||(20149272-20149342)
chr7 (120-204)||(35213746-35213830)
chr7 (119-190)||(2474852-2474923)
chr7 (119-190)||(19492076-19492147)
chr7 (120-191)||(21080021-21080092)
chr7 (120-179)||(39465675-39465734)
chr7 (113-190)||(8036360-8036437)
chr7 (117-190)||(10199447-10199520)
chr7 (117-190)||(23160799-23160872)
chr7 (122-190)||(1787158-1787226)
chr7 (130-190)||(9412898-9412958)
chr7 (118-190)||(31176895-31176966)
chr7 (119-171)||(38174896-38174948)
chr7 (138-190)||(39435174-39435226)
chr7 (123-191)||(39466039-39466107)
[»] chr2 (19 HSPs)
chr2 (120-190)||(21885130-21885200)
chr2 (120-190)||(34753406-34753476)
chr2 (120-208)||(25915017-25915105)
chr2 (120-190)||(13450355-13450425)
chr2 (120-190)||(9191964-9192034)
chr2 (118-176)||(33133800-33133858)
chr2 (118-190)||(1397275-1397347)
chr2 (115-191)||(13594052-13594128)
chr2 (118-190)||(33134329-33134401)
chr2 (118-190)||(36817310-36817382)
chr2 (120-187)||(18746251-18746318)
chr2 (118-177)||(35125740-35125799)
chr2 (120-190)||(8875261-8875331)
chr2 (120-190)||(9169952-9170022)
chr2 (120-190)||(19134063-19134133)
chr2 (159-204)||(7886174-7886219)
chr2 (118-190)||(15265774-15265846)
chr2 (120-188)||(24004381-24004449)
chr2 (118-190)||(39997275-39997347)
[»] chr4 (11 HSPs)
chr4 (126-190)||(20702726-20702790)
chr4 (118-190)||(17702363-17702435)
chr4 (119-190)||(1363929-1364000)
chr4 (119-190)||(35519274-35519345)
chr4 (120-190)||(5190634-5190704)
chr4 (120-190)||(2290849-2290919)
chr4 (120-190)||(7438047-7438117)
chr4 (120-190)||(37013096-37013165)
chr4 (119-189)||(38720804-38720874)
chr4 (126-191)||(37831137-37831202)
chr4 (120-176)||(44277093-44277149)
[»] scaffold0707 (1 HSPs)
scaffold0707 (120-190)||(169-239)
[»] scaffold0068 (1 HSPs)
scaffold0068 (120-190)||(57415-57485)
[»] chr8 (13 HSPs)
chr8 (120-190)||(5918840-5918910)
chr8 (120-191)||(15898968-15899039)
chr8 (120-190)||(15044083-15044152)
chr8 (115-180)||(11352970-11353035)
chr8 (117-190)||(35451035-35451108)
chr8 (120-172)||(23085650-23085702)
chr8 (122-190)||(38804458-38804526)
chr8 (123-190)||(18994542-18994609)
chr8 (119-184)||(9280383-9280449)
chr8 (118-208)||(27275432-27275522)
chr8 (127-204)||(288964-289041)
chr8 (120-189)||(19367853-19367922)
chr8 (159-191)||(11938016-11938048)
[»] chr5 (5 HSPs)
chr5 (122-191)||(1611812-1611881)
chr5 (122-190)||(8990556-8990624)
chr5 (119-190)||(43370381-43370452)
chr5 (125-190)||(24836953-24837018)
chr5 (158-190)||(9514968-9515000)
[»] scaffold0014 (1 HSPs)
scaffold0014 (119-191)||(21086-21158)
[»] chr3 (13 HSPs)
chr3 (119-190)||(18461102-18461173)
chr3 (119-190)||(22258405-22258476)
chr3 (120-190)||(5811917-5811987)
chr3 (120-190)||(22102620-22102690)
chr3 (118-188)||(49758211-49758281)
chr3 (121-190)||(21091777-21091846)
chr3 (118-204)||(7777752-7777839)
chr3 (119-190)||(18386715-18386785)
chr3 (120-191)||(18388580-18388651)
chr3 (119-185)||(5530819-5530885)
chr3 (120-190)||(21824221-21824291)
chr3 (118-190)||(265166-265238)
chr3 (118-170)||(14771073-14771124)
[»] scaffold0092 (1 HSPs)
scaffold0092 (120-191)||(24100-24171)
[»] scaffold0268 (1 HSPs)
scaffold0268 (117-190)||(21411-21484)
[»] scaffold0330 (1 HSPs)
scaffold0330 (126-190)||(18686-18750)
[»] scaffold0240 (1 HSPs)
scaffold0240 (126-190)||(2704-2768)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 311
Target Start/End: Original strand, 26854055 - 26854360
Alignment:
Q  6 aggagcagagacacatatatgtatgattaatttgcttttagaaatacaagtttagccacaatctctgttcaatgacgtgatattccatttctcaaataaa 105  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26854055 aggagcagaaacacatatatgtatgattaatttccttttagaaatacaagtttagccacaatctctgttcaatgacgtgatattccatttctcaaataaa 26854154  T
Q  106 gtgattaattattaactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattatagattgtatttttta 205  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  26854155 gtgattaattattaactagcgaaaagacgggcacccacttgcccgtcattctgctctttttattgcgctaacgtatgaaaattataaattgtatttttta 26854254  T
Q  206 tgactcttcctaacggcaaaacctttacacttacaattgcgcctaaaattatgatttggttgctaccattgcgcctaatatcactcttcctcatggctaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  26854255 tgactcttcctaacggcaaaacctttacacttacaattgcgcctaaaattaggatttggttgctaccattgcgcctaatatcactcttcctaatggcaaa 26854354  T
Q  306 accttt 311  Q
    ||||||    
T  26854355 accttt 26854360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 24062884 - 24062813
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||||||||||||| | |||||  |||  |||||||||||||||| |||| ||||||||||    
T  24062884 aactagcgaaaagacgggcactcacgtgcccgtttttccgctctttttattgcgctgacgtttgaaaattat 24062813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 33573738 - 33573668
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||||||||  |||||||| ||   |||||||| |||||||||||| ||||||||||    
T  33573738 actagcgaaaagacgggcactcaagtacccgtcttttcgctcttttttttgcgctaacgtttgaaaattat 33573668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 13698566 - 13698490
Alignment:
Q  115 tattaactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattata 191  Q
    |||| ||||| |||||||||||||||||| | |||||| | |  |||||||| |||||||||| | |||||||||||    
T  13698566 tatttactagggaaaagacgggcactcacgtgcccgtcttgccactctttttgttgcgctaacatttgaaaattata 13698490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 28592934 - 28592866
Alignment:
Q  122 tagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||||| | || |||||||| |||  |||||||||||||||||| |  ||||||||||    
T  28592934 tagcgaaaagacgggcatttacgtacccgtctttccgctctttttattgcgctaatggttgaaaattat 28592866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 9894219 - 9894290
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||  ||||||||| | |||||| ||   ||||||||||||| ||||||| ||||||||||    
T  9894219 aactagcgaaaagataggcactcacattcccgtcttttcactctttttattgcactaacgtttgaaaattat 9894290  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 37705630 - 37705702
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||||||||||| || | ||| |||| ||||||||||||||||||||| ||||||||||    
T  37705630 taactagcgaaaagacgggcactcacatatctgtctttctgctctttttattgcgctaacgtttgaaaattat 37705702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 47402437 - 47402507
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||||||||| || | || ||| |||  |||||||||||||| |||||| ||||||||||    
T  47402437 actagcgaaaagacgggcacttacgtgcctgtctttccactctttttattgcggtaacgtttgaaaattat 47402507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 9398240 - 9398168
Alignment:
Q  113 attattaactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaa 186  Q
    |||||||| |||||||||||||||||||||| | |||||| |||  ||||||||| |||||||| || ||||||    
T  9398240 attattaa-tagcgaaaagacgggcactcacgtgcccgtctttccactctttttaatgcgctaaggtttgaaaa 9398168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 34749094 - 34749026
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaatta 189  Q
    ||||| |||||||||| ||||||| | |||||| |||  ||||||||||||||||||||| |||||||||    
T  34749094 actagtgaaaagacgg-cactcacatgcccgtctttccactctttttattgcgctaacgtttgaaaatta 34749026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 5965559 - 5965615
Alignment:
Q  134 gggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||| | |||||| |||| ||||||||||||| ||||||| ||||||||||    
T  5965559 gggcactcacgtgcccgtctttctgctctttttattgctctaacgtttgaaaattat 5965615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 650120 - 650187
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaat 187  Q
    ||||||| |||||||||||||||  | |||||| |||  ||||||||||||||||||| | |||||||    
T  650120 actagcgcaaagacgggcactcatgtgcccgtctttccgctctttttattgcgctaacatttgaaaat 650187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 1580999 - 1581070
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattata 191  Q
    |||||||||||||||| ||||||  |  ||||| |||  |||||||||||||||||| || |||||||||||    
T  1580999 actagcgaaaagacggacactcaggtgtccgtctttccgctctttttattgcgctaaagtttgaaaattata 1581070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 34011016 - 34011083
Alignment:
Q  123 agcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||| |||| |||| | |||||| |||  ||||||||||||| ||||||| ||||||||||    
T  34011016 agcgaaaagacaggcagtcacgtgcccgtctttccgctctttttattgcactaacgtttgaaaattat 34011083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 44645150 - 44645080
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaatta 189  Q
    |||||||||||||| |||| ||||| |  ||||| |||  |||||||||||| |||||||| |||||||||    
T  44645150 aactagcgaaaagatgggccctcacatgtccgtctttcccctctttttattgtgctaacgtttgaaaatta 44645080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 44648508 - 44648438
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaatta 189  Q
    ||||||||||||||  ||||||||| |  ||||| |||  |||||||||||| |||||||| |||||||||    
T  44648508 aactagcgaaaagataggcactcacatgtccgtctttccgctctttttattgtgctaacgtttgaaaatta 44648438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 10729219 - 10729292
Alignment:
Q  117 ttaactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||| | | |||| | | |||| |||  ||||||||||||||||||||| || |||||||    
T  10729219 ttaactagcgaaaagacgtgtaatcacgtgcacgtctttccgctctttttattgcgctaacgtttggaaattat 10729292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 8273563 - 8273491
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||| ||| |||||||| | | |||| ||| |||||||||| || |||||||| || |||||||    
T  8273563 taactagcgaaaatacgagcactcacgtgctcgtctttcctctctttttactgtgctaacgtgtgtaaattat 8273491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 20907006 - 20906970
Alignment:
Q  154 ttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  20907006 ttctgctctttttattgcgctaacgtttgaaaattat 20906970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 52043612 - 52043568
Alignment:
Q  160 tctttttattgcgctaacgtatgaaaattatagattgtatttttt 204  Q
    |||||||||||||||||||| ||||||||||| |  |||||||||    
T  52043612 tctttttattgcgctaacgtttgaaaattataaacagtatttttt 52043568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 27513150 - 27513220
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||||||||| |  ||||| ||||||| ||||||||||||||| || ||||||||||    
T  27513150 actagcgaaaagacgggcactcacgtgtccgtctttcttctatttttattgcgctaaagtttgaaaattat 27513220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 10040678 - 10040607
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||||| ||| ||| | |||||| |||| ||||||||||||||||||| | ||||||||||    
T  10040678 aactagcgaaaagacggccacccacgtgcccgtctttctgctctttttattgcgctaacatttgaaaattat 10040607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 15646928 - 15647000
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||| ||| |||||||| |||||||| | |||||| |||  ||||||||||||||||||||| ||||||||||    
T  15646928 taaccagcaaaaagacgagcactcacgtgcccgtctttccgctctttttattgcgctaacgtttgaaaattat 15647000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 5800521 - 5800451
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||| ||||||| |  ||||| |||  |||||||||||||||||| || ||||||||||    
T  5800521 actagcgaaaagacggacactcacgtgtccgtctttccgctctttttattgcgctaatgtttgaaaattat 5800451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 20149272 - 20149342
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||| ||||||  |||||||| |||  |||||||||| || ||||||| ||||||||||    
T  20149272 actagcgaaaagacggacactcatgtacccgtctttccactctttttatcgcactaacgtttgaaaattat 20149342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 35213746 - 35213830
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattatagattgtatttttt 204  Q
    |||||| ||||||||||||||||  |  ||||| ||| |||||||| ||||||||||| | |||| |||||| || |||||||||    
T  35213746 actagcaaaaagacgggcactcatatgtccgtctttcctctcttttaattgcgctaacatttgaatattataaatggtatttttt 35213830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 2474852 - 2474923
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||| ||||||||||||||||| | | | || |||  ||||||||| ||||||||||| ||||||||||    
T  2474852 aactagccaaaagacgggcactcacgtgctcatctttccgctctttttactgcgctaacgtttgaaaattat 2474923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 19492147 - 19492076
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||||||||||||| |  | ||| |||  ||||||||||||| | ||||| ||||||||||    
T  19492147 aactagcgaaaagacgggcactcacatgtctgtctttccgctctttttattgcaccaacgtttgaaaattat 19492076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 21080021 - 21080092
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattata 191  Q
    ||||||||||||| ||||||| || |  ||||| |||| ||||||||||| |||||| || |||||||||||    
T  21080021 actagcgaaaagatgggcacttacgtgtccgtctttctactctttttattacgctaaagtttgaaaattata 21080092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 39465675 - 39465734
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgt 179  Q
    |||||||||||||||| ||||||| | | |||| |||| ||||||||||||| |||||||    
T  39465675 actagcgaaaagacggacactcacgtgctcgtctttctactctttttattgcactaacgt 39465734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 8036360 - 8036437
Alignment:
Q  113 attattaactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||| | ||||||||||||| |||||||| |  | ||| |||| ||||||||||| || |||||| ||||||||||    
T  8036360 attattgattagcgaaaagacgtgcactcacgtgtctgtctttctgctctttttattacgttaacgtttgaaaattat 8036437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 10199447 - 10199520
Alignment:
Q  117 ttaactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||| |||||| ||||| |||  | |||||| |||  |||||||||||||||||| || ||||||||||    
T  10199447 ttaactagcaaaaagatgggcattcatgtgcccgtctttccgctctttttattgcgctaaagtttgaaaattat 10199520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 23160799 - 23160872
Alignment:
Q  117 ttaactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||||||||| ||||| |  ||||| |||| || |||  ||||||| ||||| ||||||||||    
T  23160799 ttaactagcgaaaagacgggccctcacgtgtccgtctttctgctatttcgattgcgcaaacgtttgaaaattat 23160872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 1787226 - 1787158
Alignment:
Q  122 tagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||| ||||||| |  ||||| |||  ||||||| |||||| |||||| ||||||||||    
T  1787226 tagcgaaaagacggacactcacgtgtccgtctttccgctcttttaattgcgttaacgtttgaaaattat 1787158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 9412958 - 9412898
Alignment:
Q  130 agacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||| |   |||| |||| ||||||||||||||||| ||| ||||||||||    
T  9412958 agacgggcactcacgtggtcgtctttctgctctttttattgcgctatcgtttgaaaattat 9412898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 31176966 - 31176895
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||| |||||||||||||| |  | |||||| || | ||||||||||| ||||||||| ||||||||||    
T  31176966 taactagcaaaaagacgggcact-atgtgcccgtctttttactctttttattacgctaacgtttgaaaattat 31176895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 38174896 - 38174948
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgc 171  Q
    ||||||||||||||||||||| ||| |  ||||| |||| |||||||||||||    
T  38174896 aactagcgaaaagacgggcacacacgtgtccgtctttctactctttttattgc 38174948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 39435226 - 39435174
Alignment:
Q  138 actcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||| | |||||| |||  ||||||||||||||||||||| ||||||||||    
T  39435226 actcacgtgcccgtctttccgctctttttattgcgctaacgtttgaaaattat 39435174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 39466107 - 39466039
Alignment:
Q  123 agcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattata 191  Q
    ||||||||||| | ||||||  | |||||| |||| |||||||||||||| |||| | |||||||||||    
T  39466107 agcgaaaagacagacactcatgtgcccgtctttctgctctttttattgcgttaacttttgaaaattata 39466039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 21885130 - 21885200
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||| |||||||||| | |||||| |||| ||||||||||||| ||||||| ||||||||||    
T  21885130 actagcgaaaagatgggcactcacgtgcccgtctttctgctctttttattgctctaacgtttgaaaattat 21885200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 34753476 - 34753406
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||||||||| | |||||| |||| ||||||||||| |||||| || ||||||||||    
T  34753476 actagcgaaaagacgggcactcacgtgcccgtctttctgctctttttattacgctaatgtttgaaaattat 34753406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 25915017 - 25915105
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattatagattgtattttttatga 208  Q
    |||||||||||||||||||||||| | |  ||| |||| ||||| ||||||||||||||| ||||||||||| |  || ||||||||||    
T  25915017 actagcgaaaagacgggcactcacgtgcttgtctttctgctcttattattgcgctaacgtttgaaaattataaacggtgttttttatga 25915105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 13450425 - 13450355
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||||| |||||| | |||||| |||  |||||||||||||||||| || ||||||||||    
T  13450425 actagcgaaaagacgggtactcacgtgcccgtctttccgctctttttattgcgctaatgtttgaaaattat 13450355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 9191964 - 9192034
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||| ||||||| | |||||| ||   ||| ||||||||||||||||| ||||||||||    
T  9191964 actagcgaaaagacggccactcacgtgcccgtcttttggctcattttattgcgctaacgtttgaaaattat 9192034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 33133800 - 33133858
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaa 176  Q
    ||||||||||||||||| |||||||| | |||||| |||  ||||||||||||||||||    
T  33133800 taactagcgaaaagacgagcactcacgtgcccgtctttccgctctttttattgcgctaa 33133858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 1397347 - 1397275
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||| |||||| ||| |||||||| |||  ||||||||||| ||||||| | | ||||||||    
T  1397347 taactagcgaaaagatgggcacccacgtacccgtcattccactctttttattacgctaaccttttaaaattat 1397275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 13594052 - 13594128
Alignment:
Q  115 tattaactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattata 191  Q
    |||| |||| |||||||| || |||| || ||| |||| |||  ||||||||||||||||||||| |||||||||||    
T  13594052 tatttactaacgaaaagatggacacttacgtacacgtctttccgctctttttattgcgctaacgtttgaaaattata 13594128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 33134329 - 33134401
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||||||  |||||| |  ||||| |||  |||||||||||||||||| || ||||||||||    
T  33134329 taactagcgaaaagacggatactcacatgtccgtctttccactctttttattgcgctaatgtttgaaaattat 33134401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 36817310 - 36817382
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||| |||||||| || ||||||| |||||||  |||  || |||||||||||||||||| ||||||||||    
T  36817310 taactaccgaaaagatggacactcacgtacccgtttttccactttttttattgcgctaacgtttgaaaattat 36817382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 18746318 - 18746251
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaat 187  Q
    |||||| |||||||| |||||||  | |||||| |||| |||||||||||||||||| || |||||||    
T  18746318 actagcaaaaagacgagcactcatgtccccgtctttctgctctttttattgcgctaaagtttgaaaat 18746251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 35125740 - 35125799
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaac 177  Q
    |||||||||||||||||  ||||||| |||||| | |||| |||||||||||| ||||||    
T  35125740 taactagcgaaaagacgtacactcacgtacccgcctttctgctctttttattgtgctaac 35125799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 8875261 - 8875331
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||| |||||||| | ||| | |||||| |||  ||||||||||||||||||| | ||||||||||    
T  8875261 actagcgaatagacgggctcccacgtgcccgtctttccgctctttttattgcgctaacatttgaaaattat 8875331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 9170022 - 9169952
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||||||| |||| |  | ||| |||  ||||||||||||||||||||| | ||||||||    
T  9170022 actagcgaaaagacgggcaatcacgtgactgtctttccactctttttattgcgctaacgtttaaaaattat 9169952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 19134133 - 19134063
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||| ||||||| || ||||  |||| |||||||||||||| |||| | || |||||||    
T  19134133 actagcgaaaagacggacactcacatatccgtttttctgctctttttattgcgttaacatgtgtaaattat 19134063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 7886174 - 7886219
Alignment:
Q  159 ctctttttattgcgctaacgtatgaaaattatagattgtatttttt 204  Q
    ||||||||||||||||||||| | ||||||||| || |||||||||    
T  7886174 ctctttttattgcgctaacgtttaaaaattataaatggtatttttt 7886219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 15265846 - 15265774
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||| |||||||||| |||  ||| | |||||| |||  ||||||||||| ||||||||| ||||||||||    
T  15265846 taactatcgaaaagacgagcatccacgtgcccgtctttccgctctttttattacgctaacgtttgaaaattat 15265774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 24004381 - 24004449
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaatt 188  Q
    ||||||||||| | |||||||||| | || ||| |||  ||||||||||||||| ||||| ||||||||    
T  24004381 actagcgaaaaaatgggcactcacgtgcctgtctttccgctctttttattgcgccaacgtttgaaaatt 24004449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 39997275 - 39997347
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||| | ||||||| | ||||||| | ||| || |||| |||||||||||||||||| || ||||||||||    
T  39997275 taactaccaaaaagacagacactcacgtgcccatctttctactctttttattgcgctaatgtttgaaaattat 39997347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 20702790 - 20702726
Alignment:
Q  126 gaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||| | |||||| |||  ||||||||||||||||||||| ||||||||||    
T  20702790 gaaaagacgggcactcacgtgcccgtctttccgctctttttattgcgctaacgtttgaaaattat 20702726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 17702363 - 17702435
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||||||||||  | ||| || |||  ||||||||| ||||||||||| ||||||||||    
T  17702363 taactagcgaaaagacgggcactcatgtgcccctctttccgctctttttactgcgctaacgtttgaaaattat 17702435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 1364000 - 1363929
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||||||||||||| |  ||| | ||||  |||||||||||||||||| | ||||||||||    
T  1364000 aactagcgaaaagacgggcactcacgtgtccgactttctgttctttttattgcgctaacctttgaaaattat 1363929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 35519345 - 35519274
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||||||||||||| |  ||||| |||  |||||||||||| | |||||| ||||||||||    
T  35519345 aactagcgaaaagacgggcactcacatgtccgtctttccgctctttttattgtgttaacgtttgaaaattat 35519274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 5190704 - 5190634
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||||||||| |  | ||| |||  ||||||||||||||||||| | ||||||||||    
T  5190704 actagcgaaaagacgggcactcacctgtctgtctttccgctctttttattgcgctaacatttgaaaattat 5190634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 2290849 - 2290919
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||| ||||||  | ||| || ||| | ||||||||||||||||| || ||||||||||    
T  2290849 actagcgaaaagacggacactcaagtgcccatctttcctttctttttattgcgctaatgtttgaaaattat 2290919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 7438047 - 7438117
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||| ||||| | |||||| |||  || |||||||| ||||||||| || |||||||    
T  7438047 actagcgaaaagacgggccctcacgtgcccgtctttccgctatttttattacgctaacgtttgtaaattat 7438117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 37013096 - 37013165
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||| ||||||| | |||||  |||| |||||||||||| ||||| || ||||||||||    
T  37013096 actagcgaaaagacggacactcacatgcccgtt-ttctgctctttttattgtgctaaagtttgaaaattat 37013165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 38720804 - 38720874
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaatta 189  Q
    |||||||||||||| |||| ||||| |  ||||| |||  |||||||||||| |||||||| |||||||||    
T  38720804 aactagcgaaaagatgggccctcacatgtccgtctttcccctctttttattgtgctaacgtttgaaaatta 38720874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 37831202 - 37831137
Alignment:
Q  126 gaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattata 191  Q
    |||||||||||||||||| | ||  || |||| || |||||||||||||||||| | |||||||||    
T  37831202 gaaaagacgggcactcacgtgccaatctttctgctatttttattgcgctaacgtttcaaaattata 37831137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 44277093 - 44277149
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaa 176  Q
    |||||||||||||||||||||||| | |  ||| |||  ||||||||||||||||||    
T  44277093 actagcgaaaagacgggcactcacgtgcatgtctttccgctctttttattgcgctaa 44277149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 169 - 239
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||||||||  |||||||| ||   |||||||| |||||||||||| ||||||||||    
T  169 actagcgaaaagacgggcactcaagtacccgtcttttcgctcttttttttgcgctaacgtttgaaaattat 239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 57415 - 57485
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||| ||||| |||||||||||| | |||||| |||| || |||||||||||||||||| ||||||||||    
T  57415 actagagaaaatacgggcactcacgtgcccgtctttctgctatttttattgcgctaacgtttgaaaattat 57485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 5918910 - 5918840
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||| ||||||| | | |||| |||  ||||||||||||||||||||| ||||||||||    
T  5918910 actagcgaaaagacggacactcacgtgctcgtctttccgctctttttattgcgctaacgtttgaaaattat 5918840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 15899039 - 15898968
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattata 191  Q
    |||||||||||||||||||||||| |  ||||| |||  |||||||| |||| ||||||| |||||||||||    
T  15899039 actagcgaaaagacgggcactcacgtgtccgtctttccgctctttttgttgcactaacgtttgaaaattata 15898968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 15044083 - 15044152
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||||||||| | || ||  |||| ||| ||||||||||||||||| ||||||||||    
T  15044083 actagcgaaaagacgggcactcacgtgcctgtttttctgctc-ttttattgcgctaacgtttgaaaattat 15044152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 11353035 - 11352970
Alignment:
Q  115 tattaactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgta 180  Q
    |||||||||| |||||||||| ||||||| | || ||| |||  ||||||||||||||||||||||    
T  11353035 tattaactagtgaaaagacggacactcacgtgcctgtctttccgctctttttattgcgctaacgta 11352970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 35451035 - 35451108
Alignment:
Q  117 ttaactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||| | |||||| | | |||  |||  |||||||||||||| |||||||||||||||||    
T  35451035 ttaactagcgaaaagacgtgtactcacgtgcacgtttttccgctctttttattgcgttaacgtatgaaaattat 35451108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 23085702 - 23085650
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcg 172  Q
    |||||||||||||||||||||||| |||||||| |||   |||||||||||||    
T  23085702 actagcgaaaagacgggcactcacatacccgtctttccgttctttttattgcg 23085650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 38804458 - 38804526
Alignment:
Q  122 tagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||| ||||| |||  | |||||| |||  ||||||||||||||||||||| ||||||||||    
T  38804458 tagcgaaaagatgggcattcatgtgcccgtctttccgctctttttattgcgctaacgtttgaaaattat 38804526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 18994542 - 18994609
Alignment:
Q  123 agcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||| ||||||||| | |||||| |||  |||||||||||||||  |||| ||||||||||    
T  18994542 agcgaaaagactggcactcacgtgcccgtctttccgctctttttattgcgccgacgtttgaaaattat 18994609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 9280449 - 9280383
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgtt-cttctctttttattgcgctaacgtatgaa 184  Q
    |||||||||||||| |||||||||| |||||||| || | | | |||||||||||||||||| ||||    
T  9280449 aactagcgaaaagatgggcactcacatacccgtctttccgtttttttttattgcgctaacgtttgaa 9280383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 27275522 - 27275432
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattatagattgtattttttatga 208  Q
    ||||||||||||| || ||||||||| ||| |||| ||| ||| |||||| ||||| ||| | || |||||||| | |||||||| |||||    
T  27275522 taactagcgaaaaaacaggcactcacatactcgtctttcctctatttttactgcgcgaacatgtgtaaattataaactgtattttatatga 27275432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 289041 - 288964
Alignment:
Q  127 aaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattatagattgtatttttt 204  Q
    ||||||||||||||||| | |||||  || | ||||||||||| | ||||| | ||||||||||| || |||||||||    
T  289041 aaaagacgggcactcacgtgcccgtgtttttgctctttttattacactaacatttgaaaattataaatggtatttttt 288964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 19367853 - 19367922
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaatta 189  Q
    ||||||||||||| ||||| |||| | | |||| |||| ||||||||| || |||||||| |||||||||    
T  19367853 actagcgaaaagatgggcattcacgtgctcgtctttctgctctttttactgtgctaacgtttgaaaatta 19367922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 11938048 - 11938016
Alignment:
Q  159 ctctttttattgcgctaacgtatgaaaattata 191  Q
    ||||||||||||||||||||| |||||||||||    
T  11938048 ctctttttattgcgctaacgtttgaaaattata 11938016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 1611812 - 1611881
Alignment:
Q  122 tagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattata 191  Q
    ||||||||||| || ||||||| | |||||| |||| |||||||||||| |||||||| |||||||||||    
T  1611812 tagcgaaaagatggacactcacgtgcccgtctttctgctctttttattgtgctaacgtttgaaaattata 1611881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 8990624 - 8990556
Alignment:
Q  122 tagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||| |||||||| |  ||||| |||| |||||||||||| || ||||| ||||||||||    
T  8990624 tagcgaaaagacgagcactcacgtgtccgtctttctgctctttttattgtgccaacgtttgaaaattat 8990556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 43370452 - 43370381
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||| ||||||||||||||||| |  ||||| |||| ||||||||||||| ||||  | ||||||||||    
T  43370452 aactagcaaaaagacgggcactcacctgtccgtctttctgctctttttattgcactaatatttgaaaattat 43370381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 24837018 - 24836953
Alignment:
Q  125 cgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||||||| | | |||| |||  ||||||||||||||||||| | | ||||||||    
T  24837018 cgaaaagacgggcactcacgtgcacgtctttccgctctttttattgcgctaacttttaaaaattat 24836953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 9515000 - 9514968
Alignment:
Q  158 tctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||||||| ||||||||||    
T  9515000 tctctttttattgcgctaacgtttgaaaattat 9514968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 21086 - 21158
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattata 191  Q
    ||||||||||||||||||||||||| | |||||| |||  |||||||||||| | |||| | |||||||||||    
T  21086 aactagcgaaaagacgggcactcacatgcccgtctttccgctctttttattgtgttaacatttgaaaattata 21158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 18461102 - 18461173
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||||||||||||| |     || || ||||||||||||||||||||||| ||||||||||    
T  18461102 aactagcgaaaagacgggcactcacatgtttatctttattctctttttattgcgctaacgtttgaaaattat 18461173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 22258405 - 22258476
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||||| || | | |||||| ||  |||||||||||| | ||||||||||||||||||    
T  22258405 aactagcgaaaagacgggcaatctcgtgcccgtcttttctctctttttatttcactaacgtatgaaaattat 22258476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 5811917 - 5811987
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||| |||||||| | |||||| |||  ||||||||||| ||||||| | ||||||||||    
T  5811917 actagcgaaaagacgagcactcacatgcccgtctttccgctctttttatttcgctaacatttgaaaattat 5811987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 22102690 - 22102620
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||| |||||||||||||||||| | ||| || |||  |||||||||||||| |||||| ||||||||||    
T  22102690 actagtgaaaagacgggcactcacgtgcccctctttccactctttttattgcgttaacgtttgaaaattat 22102620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 49758211 - 49758281
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaatt 188  Q
    ||||||||| |||||||||||||||| | |||||| ||   |||||||||||||| |||||| ||||||||    
T  49758211 taactagcgtaaagacgggcactcacgtgcccgtcttttcgctctttttattgcgttaacgtttgaaaatt 49758281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 21091777 - 21091846
Alignment:
Q  121 ctagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||| || ||||||| |  ||||| ||| |||||||||||||| ||||||| ||||||||||    
T  21091777 ctagcgaaaagatggacactcacgtgtccgtctttcctctctttttattgcactaacgtttgaaaattat 21091846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 7777839 - 7777752
Alignment:
Q  118 taactagcgaaaagacggg-cactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattatagattgtatttttt 204  Q
    ||||||||||||||||||| ||||||| | |||||| | |  ||||||||||| |||||| || ||||||||||  || |||||||||    
T  7777839 taactagcgaaaagacggggcactcacgtgcccgtcttaccgctctttttattacgctaatgtttgaaaattattaatggtatttttt 7777752  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 18386715 - 18386785
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||||||| ||||| |  ||||| |||  ||||||||||||||||||| | ||||||||||    
T  18386715 aactagcgaaaagacgggctctcacatgtccgtcattccactctttttattgcgctaacat-tgaaaattat 18386785  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 18388580 - 18388651
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattata 191  Q
    |||||| ||||||||||||||||| |  | ||| |||  ||||||||||||| ||||||| |||||||||||    
T  18388580 actagcaaaaagacgggcactcacgtggcagtctttccgctctttttattgccctaacgtttgaaaattata 18388651  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 5530885 - 5530819
Alignment:
Q  119 aactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaa 185  Q
    ||||||||||||||  ||||||||| | |||||| |||| |||||||||||||  |||||| |||||    
T  5530885 aactagcgaaaagatcggcactcacgtgcccgtctttctgctctttttattgcattaacgtttgaaa 5530819  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 21824221 - 21824291
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||||||||||||||||| | ||| || |||  ||||||||||||| ||||  | ||||||||||    
T  21824221 actagcgaaaagacgggcactcacgttcccatctttcagctctttttattgcactaatatttgaaaattat 21824291  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 265238 - 265166
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||||||||| ||||| |  | | |||||| |||  ||||||||||||||||||||| ||||| ||||    
T  265238 taactagcgaaaagatgggcatttgcgtgcccgtctttccgctctttttattgcgctaacgtttgaaagttat 265166  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 14771073 - 14771124
Alignment:
Q  118 taactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattg 170  Q
    |||||||||||||||||| ||||||| |||||||| |||  ||||||||||||    
T  14771073 taactagcgaaaagacgg-cactcacgtacccgtctttccgctctttttattg 14771124  T

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Target: scaffold0092 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 24171 - 24100
Alignment:
Q  120 actagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattata 191  Q
    ||||||||||||||| |||||||  ||| |||| |||   |||||||||||||||||||| | |||||||||    
T  24171 actagcgaaaagacgagcactcatgtactcgtctttccgttctttttattgcgctaacgtttaaaaattata 24100  T

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Target: scaffold0268 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 21484 - 21411
Alignment:
Q  117 ttaactagcgaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    ||||||||| |||||| |||||||| | |  ||||| |||  |||||||||||||||||| || ||||||||||    
T  21484 ttaactagcaaaaagatgggcactcgcgtgtccgtctttccgctctttttattgcgctaaagtttgaaaattat 21411  T

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Target: scaffold0330 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 18750 - 18686
Alignment:
Q  126 gaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||| ||| ||| | |||||| |||  ||||||||||||||||||||| | ||||||||    
T  18750 gaaaagacggacacccacgtgcccgtctttccgctctttttattgcgctaacgtttaaaaattat 18686  T

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Target: scaffold0240 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 2768 - 2704
Alignment:
Q  126 gaaaagacgggcactcacttacccgtcgttcttctctttttattgcgctaacgtatgaaaattat 190  Q
    |||||||||| ||| ||| | |||||| |||  ||||||||||||||||||||| | ||||||||    
T  2768 gaaaagacggacacccacgtgcccgtctttccgctctttttattgcgctaacgtttaaaaattat 2704  T

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