View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_40 (Length: 278)
Name: NF18575_low_40
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_40 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 8339074 - 8338814
Alignment:
| Q |
18 |
aggagtaccaattggcttgtcataccaaaaaagagtggaatttacctaaggcattaaaaagcaatcacttttcttcaaagccaattcagggaaactctca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8339074 |
aggagtaccaattggcttgtcataccaaaaaagagtggaatttacccaaggcattaaaaagcaatcacttttcttcaaagccaatttagggaaactctca |
8338975 |
T |
|
| Q |
118 |
ctcaccaaaggtataagcctttcaattgtgcccaaaaattgaccaatgaaactaacttgcactatctttttaccactaattttaacaacattatgttgca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8338974 |
ctcaccaaaggtataagcctttcaattgtgcccaaaaattgaccaatgaaactaacttgcactatctttttaccactaattttaacaacattatgttgca |
8338875 |
T |
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| Q |
218 |
ctctaataaaaatatctttatgcaattttggtgcaactaattgccatttgtaaacaacatc |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8338874 |
ctctaataaaaatatctttatgcaattttggtgcaactaattgccatttgtaaacaacatc |
8338814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 36101190 - 36100930
Alignment:
| Q |
18 |
aggagtaccaattggcttgtcataccaaaaaagagtggaatttacctaaggcattaaaaagcaatcacttttcttcaaagccaattcagggaaactctca |
117 |
Q |
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|||||| |||||||| | ||||||||||||| |||||||| | | |||||||| || |||||||| ||||||| ||| | |||||||||||||||||| |
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| T |
36101190 |
aggagtgccaattggaatatcataccaaaaaaatgtggaattaatccaaggcattgaagagcaatcatttttctttaaacctaattcagggaaactctca |
36101091 |
T |
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| Q |
118 |
ctcaccaaaggtataagcctttcaattgtgcccaaaaattgaccaatgaaactaacttgcactatctttttaccactaattttaacaacattatgttgca |
217 |
Q |
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| | ||| || | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36101090 |
ttgatcaacggcaaaagtctttcaattgttcccaaaaattgaccaatgaaactaacttgcactatctttttaccactaattgtaacaacattatgttgcg |
36100991 |
T |
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| Q |
218 |
ctctaataaaaatatctttatgcaattttggtgcaactaattgccatttgtaaacaacatc |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36100990 |
ctctaataaaaatatctttatgcaattttggtgcaactaattgccatttgtatacaacatc |
36100930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 21483178 - 21482921
Alignment:
| Q |
18 |
aggagtaccaattggcttgtcataccaaaaaagagtggaatttacctaaggcattaaaaagcaatcacttttcttcaaagccaattcagggaaactctca |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||| | |||||||||||||| ||| |
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| T |
21483178 |
aggagtaccaattggcttatcataccaaaaaagagtggaattaacccaaggcattgaaaagcaatcactttttttcaaccctaattcagggaaactttca |
21483079 |
T |
|
| Q |
118 |
ctcaccaaaggtataagcctttcaattgtgcccaaaaattgaccaatgaaactaacttgcactatctttttaccactaattttaacaacattatgttgca |
217 |
Q |
| |
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|||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| ||| | |||||||||| |||| |
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| T |
21483078 |
ttcaccaaaggtaaaagtctttcaattgtccccaaaaattgaccaatgaaactaacttgtactatcttttgacc---aatgtgaacaacattaaactgca |
21482982 |
T |
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| Q |
218 |
ctctaataaaaatatctttatgcaattttggtgcaactaattgccatttgtaaacaacatc |
278 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21482981 |
gtctaataaaaagatctttatgcaattttggtgcaattaattgccatttgtaaacaacatc |
21482921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 34971190 - 34971456
Alignment:
| Q |
18 |
aggagtaccaattggcttgtcataccaaaaaagagtggaatttacctaaggcattaaaaagcaatcacttttcttcaaagccaattcagggaaactctca |
117 |
Q |
| |
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|||||||||||||||||| | ||||||| ||||| ||||| ||| |||||||| | | ||||||||||| |||||| | ||||||||||||||||| |
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| T |
34971190 |
aggagtaccaattggcttattccaccaaaagagagttgaattaacccaaggcattgacatacaatcactttttttcaaacctaattcagggaaactctcg |
34971289 |
T |
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| Q |
118 |
ctcaccaaaggtataagcctttcaattgtgcccaaaaattgaccaatgaaactaacttgcactatctttttacc------actaattttaacaacattat |
211 |
Q |
| |
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||| |||||||| ||| ||||||||||| || |||||||| ||||| ||||||||||| |||| |||||| || || ||||||||| ||| || |
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| T |
34971290 |
ttcatcaaaggtaaaagtctttcaattgtccctaaaaattggccaataaaactaacttgtactaccttttttcccccttgaccaattttaactacaatag |
34971389 |
T |
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| Q |
212 |
gttgcactctaataaaaatatctttatgcaattttggtgcaactaattgccatttgtaaacaacatc |
278 |
Q |
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||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34971390 |
gtttcactctaatgaaaagatctttatgcaattttggtgcaactaattgccatttgtaaataacatc |
34971456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 38 - 278
Target Start/End: Original strand, 36089901 - 36090146
Alignment:
| Q |
38 |
cataccaaaaaagagtggaatttacctaaggcattaaaaagcaatcacttttcttcaaagccaattcagggaaactctcactcaccaaaggtataagcct |
137 |
Q |
| |
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|||||||||||| ||||||||| | | ||| |||| || | |||||||||||||| ||| | |||||||||||||||||| | | |||||||| ||| || |
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| T |
36089901 |
cataccaaaaaa-agtggaattaatccaagacattgaagaacaatcacttttctttaaacctaattcagggaaactctcattgatcaaaggtaaaagtct |
36089999 |
T |
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| Q |
138 |
ttcaattgtgcccaaaaattgaccaatgaaactaacttgcactatctttttac------cactaattttaacaacattatgttgcactctaataaaaata |
231 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||| ||||| || ||| ||||| ||||||||||||||| |||||||||||| | |
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| T |
36090000 |
ttcaattgtccctaaaaattgaccaatgaaactaacttgcactaccttttcaccatgttcaccaatttgaacaacattatgttgagctctaataaaaaga |
36090099 |
T |
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| Q |
232 |
tctttatgcaattttggtgcaactaattgccatttgtaaacaacatc |
278 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||| | |||||| |
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| T |
36090100 |
tctttatgcaattttggtgctattaattgccatttgtagaaaacatc |
36090146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 36108455 - 36108193
Alignment:
| Q |
18 |
aggagtaccaattggcttgtcataccaaaaaagagtggaatttacctaaggcattaaaaagcaatcacttttcttcaaagccaattcagggaaactctca |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| | | |||||||| |||||||||| ||||| |||||| | ||||| ||||| || | |
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| T |
36108455 |
aggagtaccaattggctcaccataccaaaaaagagtggaattaatccaaggcattgaaaagcaatcgcttttgttcaaacctaattcggggaattcctta |
36108356 |
T |
|
| Q |
118 |
ctcaccaaaggtataagcctttcaattgtgcccaaaaattgaccaatgaaactaacttgcactatctttttacc------actaattttaacaacattat |
211 |
Q |
| |
|
||| ||||| || ||| ||||||||| | |||||||| |||||||||||||||| |||||||| |||||| || || ||||| |||||||||| |
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| T |
36108355 |
ttcatcaaagttaaaagtctttcaattttccccaaaaactgaccaatgaaactaatttgcactaccttttttccctcttgaccaatttgaacaacattag |
36108256 |
T |
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| Q |
212 |
gttgcactctaataaaaatatctttatgcaattttggtgcaactaattgccatttgtaaacaa |
274 |
Q |
| |
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||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36108255 |
gttgcgctctaatgaaaagatctttatgcaattttggtgcaattaattgccatttgtaaacaa |
36108193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 6839216 - 6838954
Alignment:
| Q |
18 |
aggagtaccaattggcttgtcataccaaaaaagagtggaatttacctaaggcattaaaaagcaatcacttttcttcaaagccaattcagggaaactctca |
117 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||| | | |||||||| |||||||||| ||||| |||||| | ||||| ||||| ||| | |
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| T |
6839216 |
aggagtaccaattggcttatcatgccaaaaaagagtggaattaatccaaggcattgaaaagcaatcgcttttgttcaaacctaattcggggaatttctta |
6839117 |
T |
|
| Q |
118 |
ctcaccaaaggtataagcctttcaattgtgcccaaaaattgaccaatgaaactaacttgcactatctttttacc------actaattttaacaacattat |
211 |
Q |
| |
|
|||| |||| || ||| ||||||||| | |||||||||||||||||||||||||||||||||| |||||| || || ||||| |||||||||| |
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| T |
6839116 |
ctcaacaaaactaaaagtctttcaatttttcccaaaaattgaccaatgaaactaacttgcactaccttttttccctcctgaccaatttgaacaacattag |
6839017 |
T |
|
| Q |
212 |
gttgcactctaataaaaatatctttatgcaattttggtgcaactaattgccatttgtaaacaa |
274 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
6839016 |
gttgcactctaatgaaaagatctttatgcaattttggtgcaattaattgccatttgtaaacaa |
6838954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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