View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_41 (Length: 270)
Name: NF18575_low_41
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 35501830 - 35501604
Alignment:
| Q |
28 |
gttttataaaagaactatgataactgggggaaaatgagnnnnnnnnnnnnagcaaatttgtaaataaataggtggctaaatatagtgattgttttgtatg |
127 |
Q |
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| T |
35501830 |
gttttataaaagaactatgataactgggggaaaatgagttttttgtttttagcaaatttgtaaataaataggtggctaaatatagtgattgttttgtatg |
35501731 |
T |
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| Q |
128 |
acatatgacatattatcggggttgcagaatccggggcagataaaaatatattctgggggaattttatggaagagacaggggggtggtaaatcaattgaag |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35501730 |
acatatgacatattatcggggttgcagaatccggggcagataaaaatatattctgggggaattttatggaagagacaggggggtggtaaatcaattgaag |
35501631 |
T |
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| Q |
228 |
ttgacaaatcagacatagtgagcgtga |
254 |
Q |
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||||||||||||||||||||||||||| |
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| T |
35501630 |
ttgacaaatcagacatagtgagcgtga |
35501604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 7069743 - 7069837
Alignment:
| Q |
150 |
tgcagaatccggggcagataaaaatatattctgggggaattttatggaagagacaggggggtggtaaatcaattgaagttgacaaatcagacata |
244 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
7069743 |
tgcagaatccggggcagataaaaatatattctggaggaattttatggaagagacagggaggtggtaaatcaattgatgttgacaaggcagacata |
7069837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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