View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_42 (Length: 262)
Name: NF18575_low_42
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 253
Target Start/End: Complemental strand, 47479173 - 47478925
Alignment:
| Q |
5 |
tcaagggatatggttgttaattttaaagagacttggannnnnnngttttcaattttccaacttaaagaaattattttgaataaagtgagcttgaaagaaa |
104 |
Q |
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| T |
47479173 |
tcaagggatatggttgttaattttaaagatacttggatttttttgttttcaattttccaacgtaaagaaattattttgaataaagtgagcttgaaagaaa |
47479074 |
T |
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| Q |
105 |
gcttttattcttattgtcatgaactacttcaatggaaggcttttgatttatcttagttgtttttactgttggacgatgtttgttactgagtttgtattga |
204 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47479073 |
gcttttattcttattgtcataaactactttaatggaaggcttttgatttatcttagttgtttttactgttggacgatgtttgttactgagtttgtattga |
47478974 |
T |
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| Q |
205 |
aatagtnnnnnnntcttgtatttggcattcccttgagtgtatgtctctg |
253 |
Q |
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| T |
47478973 |
aatagtaaaaaaatcttgtatttggcattcccttgagtgtatgcctctg |
47478925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 29435453 - 29435363
Alignment:
| Q |
98 |
aaagaaagcttttattcttattgtcatgaactacttcaatggaaggcttttgatttatcttagttgtttttactgttggacgatgtttgtta |
189 |
Q |
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| T |
29435453 |
aaagaaagcttt-attcatattgttatgcactacttctatggaaaccctttgatttatcttagttgttgttactgttggatgatgtttgtta |
29435363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 53428363 - 53428243
Alignment:
| Q |
49 |
gttttcaattttccaacttaaag-aaattattttgaataaagtgagcttgaaagaaagcttttattcttattgtcatgaactacttcaatggaaggcttt |
147 |
Q |
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| T |
53428363 |
gttttcaattttccagcttgtaggaaatgattttgaataatgtgagcttaaaagaaagcttttattcattctgtcatgatctaattcaacagaaagtctt |
53428264 |
T |
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| Q |
148 |
tgatttatcttagttgttttt |
168 |
Q |
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||||||||||||||| ||||| |
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| T |
53428263 |
tgatttatcttagtttttttt |
53428243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 53428232 - 53428130
Alignment:
| Q |
149 |
gatttatcttagttgtttttactgttggacgatgtttgttactgagtttgtattgaaatagtnnnnnnntcttgtatttggcattcccttgagtgtatgt |
248 |
Q |
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||||||||||||||||| |||| |||||| ||||||||||| ||| ||| ||||||||||| || ||| ||| ||||||||||||||||||| |
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| T |
53428232 |
gatttatcttagttgttgttaccgttggatgatgtttgttattgaatttccattgaaatagttaaaaattc-cgtagttgacattcccttgagtgtatgt |
53428134 |
T |
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| Q |
249 |
ctct |
252 |
Q |
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|||| |
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|
| T |
53428133 |
ctct |
53428130 |
T |
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