View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_44 (Length: 262)
Name: NF18575_low_44
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 38931703 - 38931458
Alignment:
| Q |
1 |
atgcttcatgttttaatccagagagatttgaaaaagaaggggaagcaaacaagttaattgcatttggttttggaaggaggggttgccctggaataggttt |
100 |
Q |
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| T |
38931703 |
atgcttcatgttttaagccagagagatttgaaaaagaaggggaagcaaacaagttaattgcatttggttttggaaggaggggttgccctggaataggttt |
38931604 |
T |
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| Q |
101 |
agcacatcgtacaatggcattgagtttgggattattgattcagtgttttgaatggaaaagattaaatgatgaagaagtagatatgacagaaaataaaata |
200 |
Q |
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| T |
38931603 |
agcacatcgtacaatggcattgagtttgggattattgattcagtgttttgaatggaaaagattaaatgatgaagaagtagatatgacagaaaataaaata |
38931504 |
T |
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| Q |
201 |
ggggtcgtcacgcaaaagctcaatccactagaagcaatgtgtaaag |
246 |
Q |
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| T |
38931503 |
ggggtcgtcacgcaaaagctcaatccactagaagcaatgtgcaaag |
38931458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 12151580 - 12151335
Alignment:
| Q |
1 |
atgcttcatgttttaatccagagagatttgaaaaagaaggggaagcaaacaagttaattgcatttggttttggaaggaggggttgccctggaataggttt |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||| |||| ||| |||||||||||||| |
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| T |
12151580 |
atgctgcatgttttaatccagagagatttgaaaaagaaggtgaggtaaataagttaattgcatttggttttggaagaagggcttgtcctggaataggttt |
12151481 |
T |
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| Q |
101 |
agcacatcgtacaatggcattgagtttgggattattgattcagtgttttgaatggaaaagattaaatgatgaagaagtagatatgacagaaaataaaata |
200 |
Q |
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| T |
12151480 |
ggcatatcgtacaatgtggttgagtttggcattgttgattcagtgttttgaatggaaacgattaaatgatgaagaaatagatatggcagaaaatagtaca |
12151381 |
T |
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| Q |
201 |
ggggtcgtcacgcaaaagctcaatccactagaagcaatgtgtaaag |
246 |
Q |
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| T |
12151380 |
ggggttgtcatggaaaagcttattccattagaagcaatgtgtaaag |
12151335 |
T |
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