View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_45 (Length: 256)
Name: NF18575_low_45
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 35502238 - 35502429
Alignment:
| Q |
1 |
ccctaattttgaaaatatttacaaaacaaatagataattagaatgctaataaagataatcataataattatggattagcgatgaataaagagaaagaaaa |
100 |
Q |
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| T |
35502238 |
ccctaattttgaaaatatttacaaaacaaatagataattagaatgctaataacgataatcataataattagggattagcgatgaataaagagaaagaaaa |
35502337 |
T |
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| Q |
101 |
tagtaaaataaattagggnnnnnnnncttaattacgaaaagtttgagtgatgcatgtaatgtgaaatcgagaaaacgaaaatggaagattct |
192 |
Q |
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| T |
35502338 |
tagtaaaataaattagggttttttttcttaattacgaaaagtttgagtgatgcatgtaatgtgaaatcgagaaaacgaaaatggaagattct |
35502429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 35502442 - 35502476
Alignment:
| Q |
217 |
ctgacagtgccgccacggccgccgagggtgatatt |
251 |
Q |
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| T |
35502442 |
ctgacagtgccgccacggccgccgagggtgatatt |
35502476 |
T |
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