View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_47 (Length: 250)
Name: NF18575_low_47
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_47 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 38931946 - 38931704
Alignment:
| Q |
8 |
aagcaaaggatgaactgaacactcaaatagggtatgatcgtttggtagaagagtcagacattccaaatcttccttacattcaaaacattatctacgagac |
107 |
Q |
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| T |
38931946 |
aagcaaaggatgaactgaacactcaaatagggtatgatcgtttggtagaagagtcagacattccaaatctttcttacattcaaaacattatctacgagac |
38931847 |
T |
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| Q |
108 |
acttcggttgtactctccagctccattattattgcctcgtttttcttcaaacgagtgcaatattgaaggatttactattccacgtgacacgatagttttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38931846 |
acttcggttgtactctccagctccattattattgcctcgtttttcttcaaacgagtgcaatattgaaggatttactattccacgtgacacgatagttttg |
38931747 |
T |
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| Q |
208 |
attaatgcatgggccattcaaagagatcctgaaacatggagtg |
250 |
Q |
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| T |
38931746 |
attaatgcatgggccattcaaagagatcctgaaacatggagtg |
38931704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 12151823 - 12151598
Alignment:
| Q |
8 |
aagcaaaggatgaactgaacactcaaatagggtatgatcgtttggtagaagagtcagacattccaaatcttccttacattcaaaacattatctacgagac |
107 |
Q |
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| T |
12151823 |
aagcaaaggatgaattatacaccaaaataggcaatgatcgtttggtagatgagtcagacatttcaaatcttccatacattcaaaacattatctacgagac |
12151724 |
T |
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| Q |
108 |
acttcggttgtactctccagctccattattattgcctcgtttttcttcaaacgagtgcaatattgaaggatttactattccacgtgacacgatagttttg |
207 |
Q |
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| T |
12151723 |
actaagattatactctcctgctccattactattacctcgtttttcttcggatgaatgtaatatcgaaggttatactattccacgtgacactatagttttg |
12151624 |
T |
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| Q |
208 |
attaatgcatgggccattcaaagaga |
233 |
Q |
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| T |
12151623 |
attaatgcatgggccattcaaagaga |
12151598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 38955786 - 38955843
Alignment:
| Q |
193 |
gacacgatagttttgattaatgcatgggccattcaaagagatcctgaaacatggagtg |
250 |
Q |
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||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||| |
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| T |
38955786 |
gacaccatagtattgatcaatgcttgggccattcatagagaccctgaaacatggagtg |
38955843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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