View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18575_low_48 (Length: 249)

Name: NF18575_low_48
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18575_low_48
NF18575_low_48
[»] chr6 (9 HSPs)
chr6 (15-234)||(2297316-2297535)
chr6 (39-188)||(2261232-2261381)
chr6 (15-188)||(2307461-2307634)
chr6 (62-234)||(2340096-2340268)
chr6 (61-195)||(14711313-14711447)
chr6 (56-198)||(14753379-14753521)
chr6 (62-234)||(2351549-2351721)
chr6 (78-219)||(2363195-2363336)
chr6 (78-188)||(2368972-2369082)
[»] scaffold0408 (1 HSPs)
scaffold0408 (56-187)||(553-684)
[»] chr3 (1 HSPs)
chr3 (78-219)||(4305893-4306034)
[»] chr4 (1 HSPs)
chr4 (63-234)||(5804217-5804388)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 2297535 - 2297316
Alignment:
Q  15 aatgcaagaaattagctagaatataatgaagcatatgcaaaccaagggatattccagcacacctccttcttccacttccaaatggcaacaactcaaaatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2297535 aatgcaagaaattagctagaatataatgaagcatatgcaaaccaagggacattccagcacacctccttcttccacttccaaatggcaacaactcaaaatt 2297436  T
Q  115 ttgacccccaagatcaacatctttgtgagtggtaagaaacctttcaggtttgaattctaatggatctggccaaaccctagggtctctatgaatcttccat 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  2297435 ttgacccccaagatcaacatctttgttagtggtaagaaacctttcaggtttaaattctaatggatctgaccaaaccctagagtctctatgaatcttccat 2297336  T
Q  215 agatttggcatcaatcgagt 234  Q
    ||||||||||||||||||||    
T  2297335 agatttggcatcaatcgagt 2297316  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 188
Target Start/End: Original strand, 2261232 - 2261381
Alignment:
Q  39 aatgaagcatatgcaaaccaagggatattccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatcttt 138  Q
    |||||| |||||| | |||||  |||||||| | |||  ||||||| |||||||||||||| ||||||||||||| |||||||     |||||||| |||    
T  2261232 aatgaatcatatgaagaccaaaagatattcctggacatatccttctaccacttccaaatggtaacaactcaaaatgttgacccttggcatcaacattttt 2261331  T
Q  139 gtgagtggtaagaaacctttcaggtttgaattctaatggatctggccaaa 188  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||||||||    
T  2261332 gtgagtggtaagaaatctttctggtttgaactctaatggatctggccaaa 2261381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 2307634 - 2307461
Alignment:
Q  15 aatgcaagaaattagctagaatataatgaagcatatgcaaaccaagggatattccagcacacctccttcttccacttccaaatggcaacaactcaaaatt 114  Q
    ||||||| ||| ||||||||||  |||| ||||| || |  ||||| ||||||||||  ||  ||||||| ||||||||||||||||| | | |||||||    
T  2307634 aatgcaaaaaactagctagaatgaaatgcagcatttgaagtccaagtgatattccagggcatatccttctaccacttccaaatggcaatagcacaaaatt 2307535  T
Q  115 ttgacccccaagatcaacatctttgtgagtggtaagaaacctttcaggtttgaattctaatggatctggccaaa 188  Q
       ||||| || |||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||    
T  2307534 actacccctaacatcaacatctttatgagtggtaagaaatctttctggtttgaactctaatggatctggccaaa 2307461  T

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Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 2340268 - 2340096
Alignment:
Q  62 gatattccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttcag 161  Q
    |||||||||| |||  ||||||| |||||||||||||| || |  |||||||  | ||| | || ||||||| |||| |||||||||| ||||||||| |    
T  2340268 gatattccaggacatttccttctaccacttccaaatggtaatagttcaaaatgattacctctaacatcaacagctttatgagtggtaaaaaacctttctg 2340169  T
Q  162 gtttgaattctaatggatctggccaaaccctagggtctctatgaatcttccatagatttggcatcaatcgagt 234  Q
    ||||||| |||||||||||||||||||| ||||| ||| | ||||||||||| |||||||  || ||||||||    
T  2340168 gtttgaactctaatggatctggccaaacactaggatctgtttgaatcttccaaagatttgtgattaatcgagt 2340096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 195
Target Start/End: Original strand, 14711313 - 14711447
Alignment:
Q  61 ggatattccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttca 160  Q
    ||||||||||| |||| |||||||||||||||||||||| || | ||||||||  | ||| | || |||||||||||| ||||| |||||||| || |||    
T  14711313 ggatattccaggacacatccttcttccacttccaaatggtaaaagctcaaaatgattacctctaacatcaacatctttatgagttgtaagaaatctctca 14711412  T
Q  161 ggtttgaattctaatggatctggccaaaccctagg 195  Q
    |||||||| || |||||||| |||||||| |||||    
T  14711413 ggtttgaactccaatggatccggccaaacactagg 14711447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 14753379 - 14753521
Alignment:
Q  56 ccaagggatattccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacc 155  Q
    |||| ||||||||||| |||  |||||||||||||||||||||| || ||||||||||  ||||||  || |||||||||||| ||||| |||||||| |    
T  14753379 ccaaaggatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgatgacccttaacatcaacatctttatgagttgtaagaaatc 14753478  T
Q  156 tttcaggtttgaattctaatggatctggccaaaccctagggtc 198  Q
    |  |||| ||||| || |||||||| |||||||| ||||||||    
T  14753479 tcccaggcttgaactccaatggatccggccaaacgctagggtc 14753521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 2351721 - 2351549
Alignment:
Q  62 gatattccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttcag 161  Q
    |||||| ||| |||| ||||||| |||||||||||||| |  |  |||||||  | ||| | || ||||||| |||| |||||||||||||||||||| |    
T  2351721 gatattgcaggacacttccttctaccacttccaaatggtagtagttcaaaatgattacctctaacatcaacaactttatgagtggtaagaaacctttctg 2351622  T
Q  162 gtttgaattctaatggatctggccaaaccctagggtctctatgaatcttccatagatttggcatcaatcgagt 234  Q
    ||||||| ||||||||||||| |||||| ||||| ||  | ||||||||||| |||||| |||| || |||||    
T  2351621 gtttgaactctaatggatctgaccaaacactaggatcagtttgaatcttccaaagatttagcattaaccgagt 2351549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 2363336 - 2363195
Alignment:
Q  78 tccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttcaggtttgaattctaatgg 177  Q
    ||||||| |||| ||||||||| || | ||||||||  | ||| | || ||||| |||||| || || ||||||||||| || ||||||||| |||||||    
T  2363336 tccttctaccacctccaaatggtaatagctcaaaatgattacctctaaaatcaatatctttatgcgttgtaagaaacctctccggtttgaatactaatgg 2363237  T
Q  178 atctggccaaaccctagggtctctatgaatcttccatagatt 219  Q
    ||||| ||||||  |||| ||  | ||||||||||| |||||    
T  2363236 atctgaccaaacattaggatcagtgtgaatcttccaaagatt 2363195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 2369082 - 2368972
Alignment:
Q  78 tccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttcaggtttgaattctaatgg 177  Q
    ||||||| |||| ||||||||| || | ||||||||  ||||| | || |||||| ||||| || || ||||||||||  || ||||||||||| |||||    
T  2369082 tccttctaccacctccaaatggtaatagctcaaaatgatgacctctaacatcaacgtctttatgggtagtaagaaaccgctctggtttgaattccaatgg 2368983  T
Q  178 atctggccaaa 188  Q
    || || |||||    
T  2368982 atttgaccaaa 2368972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 684 - 553
Alignment:
Q  56 ccaagggatattccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacc 155  Q
    |||| ||||||||||| |||  |||||||||||||||||||||| || ||||||||||  ||||||  || |||||||||||| ||||| |||||||| |    
T  684 ccaaaggatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgatgacccttaacatcaacatctttatgagttgtaagaaatc 585  T
Q  156 tttcaggtttgaattctaatggatctggccaa 187  Q
    |  |||| ||||| || |||||||| ||||||    
T  584 tcccaggcttgaactccaatggatccggccaa 553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 4306034 - 4305893
Alignment:
Q  78 tccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttcaggtttgaattctaatgg 177  Q
    ||||||| |||||||||||||| || ||||||||||  ||||||  || ||||||| |||| ||||| |||||||||| ||| |||||||| ||||| ||    
T  4306034 tccttctaccacttccaaatggtaataactcaaaatgatgacccttaacatcaacacctttatgagtagtaagaaaccgttctggtttgaactctaaagg 4305935  T
Q  178 atctggccaaaccctagggtctctatgaatcttccatagatt 219  Q
     |||  ||||||| |||| ||  |||| ||||||||||||||    
T  4305934 ttctaaccaaaccttaggatcagtatggatcttccatagatt 4305893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 234
Target Start/End: Original strand, 5804217 - 5804388
Alignment:
Q  63 atattccagcacacctccttcttccacttccaaatggcaacaactcaaaattttgacccccaagatcaacatctttgtgagtggtaagaaacctttcagg 162  Q
    ||||||||| |||  ||||||| ||||||||||||||    |  |||||||  | ||||| || ||||| |||||| ||||| |||||||||||||| ||    
T  5804217 atattccaggacatttccttctaccacttccaaatggttgtagttcaaaatgattacccctaacatcaatatctttatgagttgtaagaaacctttctgg 5804316  T
Q  163 tttgaattctaatggatctggccaaaccctagggtctctatgaatcttccatagatttggcatcaatcgagt 234  Q
     || || |||||||||| ||||||||| ||| | ||| | || |||||||| |||||||  || ||||||||    
T  5804317 cttaaaatctaatggatttggccaaacactaagatctgtttggatcttccaaagatttgtgattaatcgagt 5804388  T

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