View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18575_low_49 (Length: 249)
Name: NF18575_low_49
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_49 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 31322617 - 31322396
Alignment:
| Q |
17 |
tcattattggtaggtcggtggtataagttataacgctaaaaaagtatcaagaagaatatttaatttagagtttgatgcatgttgatattagtttccccat |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31322617 |
tcattattgataggtcggtggtataagttataacgctaaaaaagtatcaagaagaatatttaatttagagtttgatgcatgttgatattagtttccccat |
31322518 |
T |
|
| Q |
117 |
cccttgactaatttaccactaacatttgcctataaaaaatcataatcaattagtgtttaatggatcatggggctaggggtgcatacgactaagatgacta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31322517 |
cccttgactaatttaccactaacatttgcctataaaaaatcataatcaattagtgtttaatggatcatggggctaggggtgcatacgactaagatgacta |
31322418 |
T |
|
| Q |
217 |
aatcttacataatattcttgga |
238 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
31322417 |
aatcttacataatatacttgga |
31322396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University