View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_5 (Length: 714)
Name: NF18575_low_5
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 11 - 701
Target Start/End: Complemental strand, 39887986 - 39887289
Alignment:
| Q |
11 |
tcatcagtacctttttcaatctacaagagtttcaagaaatgaaatcttgtttgatttcttaacaagccaacaaaacaatggtccaata--atatggtcag |
108 |
Q |
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| T |
39887986 |
tcatcagtatctttttcaatctacaagagtttcaagaaatgaaatcttgtttgatttcttaacaagccaacaaaacaatggtccaatataatatggtcag |
39887887 |
T |
|
| Q |
109 |
ctatgtaacttgtataagctacgaagcataaactctggcatagacacaaatacggacatgtcacattgctaatgtccaaacggacaccattcgatattta |
208 |
Q |
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| T |
39887886 |
ctatgtaacttgtataagctatgaagcataaactctgacatagacacaaatacggacacgtcacattgctaatgtccaaacgggcaccattagatattta |
39887787 |
T |
|
| Q |
209 |
tttattcacattacctttccaaggagacaacttttttctgttggtaagtttgccaagggtctgctatgcaaaacctcacatagtttgagagaatgaatac |
308 |
Q |
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| T |
39887786 |
tttattcacattacctttccaaggagacaacttttttctgttggtaagtttgccaagggtctgctatgcaaaacctcacatagtttgagagaatgaatac |
39887687 |
T |
|
| Q |
309 |
cattttctgcaacatctctttccctttcattccatatgtttaggagttccattgatggcgcagttccaattataccaggatgtgttatacctggaaacct |
408 |
Q |
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| T |
39887686 |
cattttctgcaacatctctttccctttcattccatatgtttaggagttccattgatggcgcagttccaattataccaggatgtgttatacctggaaacct |
39887587 |
T |
|
| Q |
409 |
cactcctatccgacaaaaatgatcacatgagtggcaaaacatgtagaaagtgcattgtataattcactttaactaagtttgcatacaacctttgttctca |
508 |
Q |
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| T |
39887586 |
cactcctatccgacaaaaatgatcacatgagtggccaaacatgtagaaagtgcattgtataattcactttaactaagtttgtatactccctttgttctca |
39887487 |
T |
|
| Q |
509 |
tatataataagcaaaaagaaaactacctcacattctttaagaaaagtagttaatctcat-----tagcattaaatgtggtcaaattagttaagctttgtt |
603 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
39887486 |
tatataataagcaaaaagaaaactacctcacattctttaagaaaagtagttaatctcattaaaatagcattaaatgtggtaaaattagttaagctttgtt |
39887387 |
T |
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| Q |
604 |
catattatacatcacaaaacatgactttttgttccttaaattccaaactggttatataaacaaaaagtggtgtattagtcctttaacctggtatctga |
701 |
Q |
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| T |
39887386 |
catattatacatcacaaaacatgactttttgttccttaaattccaaactggttatataaacaaaaagtggtgtattagtcctttaacctggtatctga |
39887289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 521 - 568
Target Start/End: Original strand, 16777355 - 16777402
Alignment:
| Q |
521 |
aaaaagaaaactacctcacattctttaagaaaagtagttaatctcatt |
568 |
Q |
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| T |
16777355 |
aaaaaaaaaactacctcacaccctttaagaaaagtagttaatctcatt |
16777402 |
T |
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