View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_52 (Length: 243)
Name: NF18575_low_52
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 47 - 233
Target Start/End: Complemental strand, 4261468 - 4261282
Alignment:
| Q |
47 |
gttgtttttactaataacagatataaagtattgtcttaacatcttttttgatgccttggaccaaatgacaaagaagaatagaataagagtagatcataaa |
146 |
Q |
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| T |
4261468 |
gttgtttttactaataacagatataaagtattgtcttaacatcttttttgatgccttggaccaaatgacaaagaagaatagaataagagtagatcataaa |
4261369 |
T |
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| Q |
147 |
agatcatatgcttttttatttgctagtttgtgcagattgactcattcaaccaatctcatttacttctgatatgctgattgatgatgt |
233 |
Q |
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| T |
4261368 |
agatcatatgcttttttatttggtcatttgtgcagattgactcattcaactgttctcatttactgctgatatgctgattgctgatgt |
4261282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 4037825 - 4037940
Alignment:
| Q |
44 |
cttgttgtttttactaataacagatataaagtattgt--cttaacatcttttttgatgccttggaccaaatgacaaagaagaatagaataagagtagatc |
141 |
Q |
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| T |
4037825 |
cttgttgtctttaccaataacagatatatagtattgtgtcttaacatctcctttggtacctttgacaaaataacaagcaataatagaatatgagtagatc |
4037924 |
T |
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| Q |
142 |
ataaaagatcatatgc |
157 |
Q |
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| T |
4037925 |
ataaaagatcatatgc |
4037940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 4027537 - 4027602
Alignment:
| Q |
82 |
ttaacatcttttttgatgccttggaccaaatgacaaagaagaatagaataagagtagatcataaaa |
147 |
Q |
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| T |
4027537 |
ttaacatctactttgatgccttggacaaaatgacagacaaaaatagaataagagtagttcataaaa |
4027602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 4268263 - 4268221
Alignment:
| Q |
92 |
ttttgatgccttggaccaaatgacaaagaagaatagaataaga |
134 |
Q |
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| T |
4268263 |
ttttgatgccttggatcaaatgacaaacaagaatagaataaga |
4268221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 4261511 - 4261478
Alignment:
| Q |
18 |
ctaatagcccataggtttaggccattcttgttgt |
51 |
Q |
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| T |
4261511 |
ctaatagcccataggtttaggccattcttgttgt |
4261478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 4027480 - 4027516
Alignment:
| Q |
18 |
ctaatagcccataggtttaggccattcttgttgtttt |
54 |
Q |
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| T |
4027480 |
ctaatagcccataggtttaggccatttttgttgtttt |
4027516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 4268344 - 4268308
Alignment:
| Q |
18 |
ctaatagcccataggtttaggccattcttgttgtttt |
54 |
Q |
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| T |
4268344 |
ctaatagcccatagttttaagccattcttgttgtttt |
4268308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 24052702 - 24052829
Alignment:
| Q |
93 |
tttgatgccttggaccaaatgacaaagaagaatagaataagagtagatcataaaagatcatatgcttttttatttgctagtttgtgcagattgactcatt |
192 |
Q |
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| T |
24052702 |
tttgatgccttggaccaaatgtcaaacaagattagaataagagtagatcataaaagatcatatgcatttctatttggtagtttgtatagactgactcatt |
24052801 |
T |
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| Q |
193 |
caaccaatctcatttacttctgatatgc |
220 |
Q |
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| T |
24052802 |
caaccgttctcatttacttctgatatgc |
24052829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 24049566 - 24049693
Alignment:
| Q |
93 |
tttgatgccttggaccaaatgacaaagaagaatagaataagagtagatcataaaagatcatatgcttttttatttgctagtttgtgcagattgactcatt |
192 |
Q |
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| T |
24049566 |
tttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatttctatttggtagtttgtatagactgactcatt |
24049665 |
T |
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| Q |
193 |
caaccaatctcatttacttctgatatgc |
220 |
Q |
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| T |
24049666 |
caaccgttctcatttacttctgatatgc |
24049693 |
T |
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