View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_55 (Length: 239)
Name: NF18575_low_55
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 47479165 - 47479385
Alignment:
| Q |
1 |
atcccttgacaaacattgccttcttagcttcatcgtatccaagcatagataacacattactaacagagattagtgttatttccaagctgagccaaagaac |
100 |
Q |
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| T |
47479165 |
atcccttgacaaacattgccttcttagcttcatcgtatccaagcatagataacacattactaacagagattagtgttatttccaagctgagccaaagaac |
47479264 |
T |
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| Q |
101 |
tagcttccaagcataacatattgggatttagttgcttcaactttttgtagtccacctgtcaaattaaaaacaagagataaattattttatggtcctcaat |
200 |
Q |
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| T |
47479265 |
tagcttccaagcataacatattgggatttagttgcttcaactttttgtagtccacctgtcaaattaaaaacaagagataaattattttatggtcctcaat |
47479364 |
T |
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| Q |
201 |
tttaaactctaaagtaaatgc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
47479365 |
tttaaactctaaagtaaatgc |
47479385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 53428400 - 53428435
Alignment:
| Q |
1 |
atcccttgacaaacattgccttcttagcttcatcgt |
36 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
53428400 |
atcccttgacaagcattgccttcttagcttcatcgt |
53428435 |
T |
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