View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_56 (Length: 237)
Name: NF18575_low_56
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 26854573 - 26854773
Alignment:
| Q |
14 |
catcatcactttcatcatctgcacattcatcgttagaactatcatcatctttattatgttcaacattctcattacctttaccttgactcccaacaaaatt |
113 |
Q |
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| T |
26854573 |
catcatcactttcatcatctgcacattcatctttaggactatcatcatctacattatgttcaacattctcattacctttaccttgactcccaacaaaatt |
26854672 |
T |
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| Q |
114 |
cggataggttttatcatcattcaaattcacatccgtagaaccataataagtggaacaaaaatccctaaaatcattgtcgttgttttccatctagtgtaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
26854673 |
cggataggttttatcatcattcaaattcacatccgtagaaccataataagtggaacaaaaatccgtaaaatcattgtcattgttttccatctagtgtaaa |
26854772 |
T |
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| Q |
214 |
c |
214 |
Q |
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| |
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| T |
26854773 |
c |
26854773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 9962652 - 9962762
Alignment:
| Q |
50 |
aactatcatcatctttattatgttcaacattctcattacctttaccttgactcccaacaaaattcggataggttttatcatcattcaaattcacatccgt |
149 |
Q |
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|||||||||| ||| ||||||||||||||||||| || |||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
9962652 |
aactatcatcgtctacattatgttcaacattctcagtagatttaccttgactaccaacaatcaccggataggttttatcatcattcaaatccacatccgt |
9962751 |
T |
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| Q |
150 |
agaaccataat |
160 |
Q |
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|||||| |||| |
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| T |
9962752 |
agaaccgtaat |
9962762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 15845456 - 15845594
Alignment:
| Q |
70 |
tgttcaacattctcattacctttaccttgactcccaacaaaattcggataggttttatcatcattcaaattcacatccgtagaac------cataataag |
163 |
Q |
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||||||||||||||| || ||||||||||||||| |||| ||||| ||||| || ||| |||||| |||||||||||||| |||| | || |
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| T |
15845456 |
tgttcaacattctcaatagatttaccttgactcccgacaatcatcggagaggtt---tcgtcactcaaatccacatccgtagaaccgtaatcatattcag |
15845552 |
T |
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| Q |
164 |
tggaacaaaaatccctaaaatcattgtcgttgttttccatct |
205 |
Q |
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|||| ||||||| |||||||||||| |||||||||||||| |
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| T |
15845553 |
gtgaaccaaaatccgtaaaatcattgttgttgttttccatct |
15845594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 15854666 - 15854804
Alignment:
| Q |
70 |
tgttcaacattctcattacctttaccttgactcccaacaaaattcggataggttttatcatcattcaaattcacatccgtagaac------cataataag |
163 |
Q |
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||||||||||||||| || ||||||||||||||| |||| ||||| ||||| || ||| |||||| |||||||||||||| |||| | || |
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| T |
15854666 |
tgttcaacattctcaatagatttaccttgactcccgacaatcatcggagaggtt---tcgtcactcaaatccacatccgtagaaccgtaatcatattcag |
15854762 |
T |
|
| Q |
164 |
tggaacaaaaatccctaaaatcattgtcgttgttttccatct |
205 |
Q |
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|||| ||||||| |||||||||||| |||||||||||||| |
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| T |
15854763 |
gtgaaccaaaatccgtaaaatcattgttgttgttttccatct |
15854804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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