View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18575_low_6 (Length: 689)

Name: NF18575_low_6
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18575_low_6
NF18575_low_6
[»] chr3 (27 HSPs)
chr3 (19-678)||(41985589-41986249)
chr3 (179-668)||(41980825-41981317)
chr3 (537-676)||(9494822-9494961)
chr3 (523-678)||(9407327-9407482)
chr3 (526-678)||(9425534-9425686)
chr3 (523-661)||(9343823-9343961)
chr3 (417-639)||(9448314-9448536)
chr3 (523-671)||(9329804-9329952)
chr3 (523-678)||(9617463-9617618)
chr3 (523-671)||(9336508-9336656)
chr3 (526-658)||(9655360-9655492)
chr3 (523-671)||(9695616-9695764)
chr3 (523-678)||(9397746-9397903)
chr3 (526-658)||(9646367-9646499)
chr3 (537-669)||(9352871-9353003)
chr3 (523-679)||(9432856-9433012)
chr3 (523-678)||(9416534-9416689)
chr3 (538-631)||(9340679-9340772)
chr3 (576-669)||(9377056-9377149)
chr3 (579-674)||(9614009-9614104)
chr3 (531-669)||(9626488-9626626)
chr3 (557-657)||(9441815-9441915)
chr3 (538-669)||(9347957-9348088)
chr3 (538-669)||(9369611-9369742)
chr3 (517-638)||(9756381-9756502)
chr3 (523-571)||(9686751-9686799)
chr3 (609-638)||(16011768-16011797)
[»] chr8 (3 HSPs)
chr8 (85-583)||(13170240-13170744)
chr8 (295-667)||(44688554-44688929)
chr8 (643-678)||(13170758-13170793)
[»] chr1 (8 HSPs)
chr1 (278-678)||(18991165-18991562)
chr1 (528-678)||(4428592-4428742)
chr1 (572-678)||(4439821-4439927)
chr1 (541-657)||(235195-235311)
chr1 (546-661)||(8814385-8814500)
chr1 (548-665)||(246841-246958)
chr1 (541-644)||(251412-251515)
chr1 (546-631)||(231589-231674)
[»] chr2 (1 HSPs)
chr2 (526-669)||(20694304-20694447)
[»] chr6 (10 HSPs)
chr6 (523-671)||(7041464-7041612)
chr6 (541-677)||(7046801-7046937)
chr6 (541-669)||(7025720-7025854)
chr6 (541-669)||(7012784-7012918)
chr6 (541-602)||(7029850-7029911)
chr6 (543-668)||(9159515-9159646)
chr6 (541-668)||(9170782-9170915)
chr6 (179-218)||(2926346-2926385)
chr6 (177-219)||(7041904-7041946)
chr6 (179-219)||(9171234-9171274)
[»] chr7 (2 HSPs)
chr7 (536-668)||(3695661-3695792)
chr7 (523-631)||(450111-450219)
[»] chr5 (2 HSPs)
chr5 (537-661)||(18571086-18571213)
chr5 (541-668)||(33541623-33541750)


Alignment Details
Target: chr3 (Bit Score: 595; Significance: 0; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 19 - 678
Target Start/End: Complemental strand, 41986249 - 41985589
Alignment:
Q  19 acctccttcatcatggaagaagaaccagaaccgaccgagtcacaactgtgcatatggaactgctccaggagagatttgaattccattacttgaacttaca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  41986249 acctccttcatcatggaagaagaaccagaaccgaccgagtcacaactgtgcat--ggaactgctccaggagagatttgaattccattacttgaacttaca 41986152  T
Q  119 agatgaagcttttaaacatgcaatnnnnnnnnnggaaatggaaaataaggcaatgggaataaaggttgttgctgtcacgtgccatgggaaaaatcctctc 218  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41986151 agatgaagcttttaaacatgcaatagaaaaaaaggaaatggaaaataaggcaatgggaataaaggttgttgctgtcacgtaccatgggaaaaatcctctc 41986052  T
Q  219 gctcttgtcacattgaactgtgcctgccatccgctactgttccattgccgcaaagagtgttggacgccgatcccttgcatgtcaacgtactttctagaca 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41986051 gctcttgtcacattgaactgtgcctgccatccgctactgttccattgccgcaaagagtgttggacgccgatcccttgcgtgtcaacgtactttctagaca 41985952  T
Q  319 tctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttggaccggactatagtgtcgagttattggctgaatatgtgga 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985951 tctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttggaccggactatagtgtcgagttattggctgaatatgtgga 41985852  T
Q  419 tggaggggacatgaaattcctggtagagagtgagcgtg---agttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggt 515  Q
    |||||||||||||||||||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41985851 tggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgttttggtttccccggtgaagatggt 41985752  T
Q  516 ttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgt 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985751 ttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgt 41985652  T
Q  616 tttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 678  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985651 tttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 41985589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 179 - 668
Target Start/End: Complemental strand, 41981317 - 41980825
Alignment:
Q  179 aaaggttgttgctgtcacgtgccatgggaaaaatcctctcgctcttgtcacattgaactgtgcctgccatccgctactgttccattgccgcaaagagtgt 278  Q
    |||||| ||||||||||| ||||| ||| ||   ||||| ||||| | ||||||||||  ||   |||||||  ||||||| | ||| | | ||||| ||    
T  41981317 aaaggtagttgctgtcacatgccaaggggaa---cctcttgctctcggcacattgaaccatgatggccatccaatactgtttcgttgtcacgaagagcgt 41981221  T
Q  279 tggacgccgatcccttgcatgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttg 378  Q
    ||||||||||| ||    ||||||| ||  |||| ||||||||| || |||||| |  | |||||||  || ||||||  |||  ||||| ||||  |||    
T  41981220 tggacgccgatgccccatatgtcaatgtgttttcaagacatctgtgtatttaaaaagagattttgtgtggtcaataaaggtggtcggacatttgcgattg 41981121  T
Q  379 gaccggactatagtgtcgagttattggctgaatatgtgg---atggagg---ggacatgaaattcctggtagagagtgagcgtgagttgttgctagtaga 472  Q
    |||| |||||||||||| ||||| ||||||||||| |||   |||||||   |||  ||||||||||||||||||||||| |||| || |||||||| ||    
T  41981120 gaccagactatagtgtccagttagtggctgaatatttggtgtatggaggaggggatgtgaaattcctggtagagagtgagggtgaattattgctagtgga 41981021  T
Q  473 catatatgactctcattgttttggtttccctggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcg 572  Q
    ||| ||| ||||||||||| |||| |||||||||||||||||||| || ||||||||||| || |||| | |||| ||||||||||||||||||||| ||    
T  41981020 catttatcactctcattgtgttgggttccctggtgaagatggtttcaatcttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacg 41980921  T
Q  573 agtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttt 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||| | ||||||    
T  41980920 agtttaggggatagagttttgttcttggggaatggatgttcgttttttgcttctgcttcaaatttgtctgttgtcaaaggaaattgtattatcttt 41980825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 537 - 676
Target Start/End: Original strand, 9494822 - 9494961
Alignment:
Q  537 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 636  Q
    |||||||||||||||| || |||||| || |||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9494822 cttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatt 9494921  T
Q  637 tgtctgttgtcaaaggaaattgtgtcatctttagtgatga 676  Q
    |||  |||  |||||| |||||||||||||||| ||||||    
T  9494922 tgtgcgtttccaaagggaattgtgtcatctttattgatga 9494961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 523 - 678
Target Start/End: Complemental strand, 9407482 - 9407327
Alignment:
Q  523 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 622  Q
    |||||||||| |||||||| |||||| | || | |||||| ||||||  ||||||||||||||| ||||||||||| | |||||||||||| ||||||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  623 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 678  Q
    ||| ||||||||||||| ||||| |||||| ||||||||| |||||| ||||||||    
T  9407382 ttcagcttcggatttgtgtgttgccaaagggaattgtgtcttctttattgatgatg 9407327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 526 - 678
Target Start/End: Complemental strand, 9425686 - 9425534
Alignment:
Q  526 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 625  Q
    ||||||| |||||||| |||||| | || |||||||| ||||||  ||||||| || |||| ||||||||||| | |||||||||||| |||||||||||    
T  9425686 atgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgcttc 9425587  T
Q  626 tgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 678  Q
     ||||||||||||| ||||| |||||| ||||||||||||||||  |||||||    
T  9425586 agcttcggatttgtgtgttgccaaagggaattgtgtcatctttatcgatgatg 9425534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 523 - 661
Target Start/End: Complemental strand, 9343961 - 9343823
Alignment:
Q  523 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 622  Q
    |||||||||| |  |||||||||| ||||||||| ||||| |||||  | | |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  623 ttctgcttcggatttgtctgttgtcaaaggaaattgtgt 661  Q
    ||||||||||||||||| ||||   | ||||||||||||    
T  9343861 ttctgcttcggatttgtgtgttcctagaggaaattgtgt 9343823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 417 - 639
Target Start/End: Complemental strand, 9448536 - 9448314
Alignment:
Q  417 gatggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggtt 516  Q
    |||||||||||||| |||||| | || || || ||| | || ||||||||||| ||||| ||||| | |  |||||| |  ||||| |||   |||| |     
T  9448536 gatggaggggacataaaattcttagttgatagagagggagacttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgcta 9448437  T
Q  517 taaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 616  Q
    ||| | |||||||||| |  ||| |||||||||||||||||||||| |||||  | | |||||||||||| |||||||||||||||||||  ||||||||    
T  9448436 taagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgtt 9448337  T
Q  617 ttctgcttctgcttcggatttgt 639  Q
    |||||||||||||||||||||||    
T  9448336 ttctgcttctgcttcggatttgt 9448314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 523 - 671
Target Start/End: Complemental strand, 9329952 - 9329804
Alignment:
Q  523 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 622  Q
    |||||||||| || ||||||||||| ||||| |  |||||||||||||||| |||||| ||||  |||||||||||||||||||||| ||||||||||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgc 9329853  T
Q  623 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 671  Q
    ||||||||| || |||  | ||| ||| || ||||||||||||| ||||    
T  9329852 ttctgcttccgagttgggttttgccaatgggaattgtgtcatctatagt 9329804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 523 - 678
Target Start/End: Original strand, 9617463 - 9617618
Alignment:
Q  523 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 622  Q
    |||| ||||||||  || ||||||| |||||||||||||| ||||||   | |||||||||||| ||||||||| | | |||||||||||| ||||||||    
T  9617463 ttgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgc 9617562  T
Q  623 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 678  Q
    ||||||||| ||||||| ||||  |||||| |||||||||||||||| ||| ||||    
T  9617563 ttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttattgacgatg 9617618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 523 - 671
Target Start/End: Complemental strand, 9336656 - 9336508
Alignment:
Q  523 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 622  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  |||||||||||||||||||||||||||||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  623 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 671  Q
    ||||||||| || |||  | ||| ||| || ||||||||||||| ||||    
T  9336556 ttctgcttccgagttgggttttgccaatgggaattgtgtcatctatagt 9336508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 526 - 658
Target Start/End: Original strand, 9655360 - 9655492
Alignment:
Q  526 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 625  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| |||||  | ||||||||||||||||| ||    
T  9655360 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatc 9655459  T
Q  626 tgcttcggatttgtctgttgtcaaaggaaattg 658  Q
     ||||||||||||| ||||  |||||| |||||    
T  9655460 agcttcggatttgtgtgtttccaaagggaattg 9655492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 523 - 671
Target Start/End: Original strand, 9695616 - 9695764
Alignment:
Q  523 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 622  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||| | | |||||||||||| |||||||| |||||| | |  |||||||| |||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T
Q  623 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 671  Q
     |||||||| || |||| |||||  || || ||||||||||||| ||||    
T  9695716 atctgcttcagagttgtgtgttgcaaatgggaattgtgtcatctatagt 9695764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 523 - 678
Target Start/End: Complemental strand, 9397903 - 9397746
Alignment:
Q  523 ttgatgtgttcagacttgatgagaaggagaagaaa--tgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttct 620  Q
    |||||||||| |||||||| |||||| | || |||  || || ||||||  ||||||||||||||| || |||||||| | |||||||||||| |||||     
T  9397903 ttgatgtgtttagacttgacgagaagtataaaaaaaatgcgtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttcattttcc 9397804  T
Q  621 gcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 678  Q
    ||||| |||| |||||||| ||||| |||||| ||||||||| |||||| ||||||||    
T  9397803 gcttcagctttggatttgtgtgttgccaaagggaattgtgtcgtctttattgatgatg 9397746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 526 - 658
Target Start/End: Original strand, 9646367 - 9646499
Alignment:
Q  526 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 625  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| || ||  | ||||||||||||||||| ||    
T  9646367 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatc 9646466  T
Q  626 tgcttcggatttgtctgttgtcaaaggaaattg 658  Q
     ||||||||||||| ||||  |||||| |||||    
T  9646467 agcttcggatttgtgtgtttccaaagggaattg 9646499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 537 - 669
Target Start/End: Complemental strand, 9353003 - 9352871
Alignment:
Q  537 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 636  Q
    |||||||||| ||||||||| ||||| ||||||   |  ||||||| ||| ||||||||  |||||| ||||||||||||||||||||||| || ||||     
T  9353003 cttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctggttgggatc 9352904  T
Q  637 tgtctgttgtcaaaggaaattgtgtcatcttta 669  Q
    ||| | ||  |||||||||||||||||||||||    
T  9352903 tgtgtcttcccaaaggaaattgtgtcatcttta 9352871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 679
Target Start/End: Complemental strand, 9433012 - 9432856
Alignment:
Q  523 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 622  Q
    ||||||| |||||||||||||||||||||| ||| ||||| ||| |   || |||||| ||||| ||||||||| | |||  || || ||| ||||||||    
T  9433012 ttgatgttttcagacttgatgagaaggagaggaagtgggtgaagatcaagaatttaggagatagggttttgttcatagggcttgaatattccttttctgc 9432913  T
Q  623 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgt 679  Q
    ||| || |||||||||| ||||  | |||| |||||| ||||||||| |||||||||    
T  9432912 ttcagcctcggatttgtgtgtttccgaagggaattgtatcatctttattgatgatgt 9432856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 523 - 678
Target Start/End: Complemental strand, 9416689 - 9416534
Alignment:
Q  523 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 622  Q
    ||||||||||| | ||||| |||||| | || |||||||| |||||| |||||||||||||||| || |||||||| | ||||  |||||| ||||||||    
T  9416689 ttgatgtgttctgtcttgacgagaagaataaaaaatgggtgaagttgacgagtttaggggatagggtgttgttcttcgtgaataaatgttcattttctgc 9416590  T
Q  623 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 678  Q
    ||| || | |||| ||| ||||   ||||| ||||||||  |||||| ||||||||    
T  9416589 ttcagccttggatatgtgtgttactaaagggaattgtgttgtctttattgatgatg 9416534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 538 - 631
Target Start/End: Complemental strand, 9340772 - 9340679
Alignment:
Q  538 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 631  Q
    ||||||||||||||||||| ||||| ||||||  || ||| |||||||| ||||| ||| | |||  |||||||||||||||||||||||||||    
T  9340772 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttctgcttc 9340679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 576 - 669
Target Start/End: Complemental strand, 9377149 - 9377056
Alignment:
Q  576 ttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttta 669  Q
    |||||||||||  |||||||  |||||| ||||||||||||| |||||||||||| |||| ||| | ||  |||||||||||||||||||||||    
T  9377149 ttaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgcttgggatctgtgtcttcccaaaggaaattgtgtcatcttta 9377056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 579 - 674
Target Start/End: Original strand, 9614009 - 9614104
Alignment:
Q  579 ggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgat 674  Q
    |||||||  ||||| |||||||||| ||||||||| ||||||||||||||||| ||| ||| | ||  ||||||||||||||| ||||||| ||||    
T  9614009 ggggatatggtttttttcttggggagtggatgttcattttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgttatctttattgat 9614104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 531 - 669
Target Start/End: Original strand, 9626488 - 9626626
Alignment:
Q  531 ttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgctt 630  Q
    |||||| || |||||||||||||||||||||| || |||  || |||||||||||| |||||||| || || || |||   || |||||||| || ||||    
T  9626488 ttcagatttcatgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgttttttggcaaaggaacatcattttctgcatcagctt 9626587  T
Q  631 cggatttgtctgttgtcaaaggaaattgtgtcatcttta 669  Q
    ||||||||| ||||  |||||| |||||  |||||||||    
T  9626588 cggatttgtgtgtttccaaagggaattgcatcatcttta 9626626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 557 - 657
Target Start/End: Original strand, 9441815 - 9441915
Alignment:
Q  557 atgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaat 656  Q
    |||||| ||||||  ||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||| || | |||| ||| |||||||||||| |||    
T  9441815 atgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgtcaaagggaat 9441914  T
Q  657 t 657  Q
    |    
T  9441915 t 9441915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 538 - 669
Target Start/End: Complemental strand, 9348088 - 9347957
Alignment:
Q  538 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggattt 637  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  ||||||||||||||||||||||||||| ||| |    
T  9348088 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatct 9347989  T
Q  638 gtctgttgtcaaaggaaattgtgtcatcttta 669  Q
     | | ||   ||||||||||||||| ||||||    
T  9347988 atgtattccgaaaggaaattgtgtcgtcttta 9347957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 538 - 669
Target Start/End: Complemental strand, 9369742 - 9369611
Alignment:
Q  538 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggattt 637  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  ||||||||||||||||||||||||||| ||| |    
T  9369742 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatct 9369643  T
Q  638 gtctgttgtcaaaggaaattgtgtcatcttta 669  Q
     | | ||   ||||||||||||||| ||||||    
T  9369642 atgtattccgaaaggaaattgtgtcgtcttta 9369611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 638
Target Start/End: Complemental strand, 9756502 - 9756381
Alignment:
Q  517 taaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 616  Q
    ||||| |||||||||  || ||||||||||| ||||| |  ||||||||||||| || ||| |||||||| |||||||| || ||| | || ||||| ||    
T  9756502 taaagattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcatt 9756403  T
Q  617 ttctgcttctgcttcggatttg 638  Q
     ||||| ||||| |||||||||    
T  9756402 ctctgcatctgcatcggatttg 9756381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 571
Target Start/End: Complemental strand, 9686799 - 9686751
Alignment:
Q  523 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggc 571  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttggc 9686751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 609 - 638
Target Start/End: Original strand, 16011768 - 16011797
Alignment:
Q  609 tgttcgttttctgcttctgcttcggatttg 638  Q
    ||||||||||||||||||||||||||||||    
T  16011768 tgttcgttttctgcttctgcttcggatttg 16011797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 85 - 583
Target Start/End: Original strand, 13170240 - 13170744
Alignment:
Q  85 aggagagatttgaattccattacttgaacttacaagatgaagcttttaaacatgcaatnnnnnnnnnggaaatggaaaataaggcaatgggaataaaggt 184  Q
    |||| |||||| |||||| |||||||||||||| ||||||||||||| ||||||||           | |||||||||||||||||| ||||||||||||    
T  13170240 aggatagatttaaattccgttacttgaacttactagatgaagcttttgaacatgcagcagaaaaacagaaaatggaaaataaggcaaggggaataaaggt 13170339  T
Q  185 tgttgctgtcacgtgccatgggaaaaatcctctcgctcttgtcacattgaactgtgcctg------ccatccgctactgttccattgccgcaaagagtgt 278  Q
    ||||||||||| ||| ||||||||||||||||||||||||  |||||||||  ||  | |      |||||| |||||||||||||||||| ||||| ||    
T  13170340 tgttgctgtcatgtgtcatgggaaaaatcctctcgctcttagcacattgaatggtcacggtcagggccatccactactgttccattgccgcgaagagcgt 13170439  T
Q  279 tggacgccgatcccttgcatgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttg 378  Q
    |||||||| ||||| ||||||| |||| ||||| |||| |||||| |||||||||| |||||||||||||| |||||||||||  |||||||||||||||    
T  13170440 tggacgcctatcccctgcatgtaaacgaactttttagatatctgcatgtttaaagatcggttttgtgcagtcaataaaattggtcggacagttgcttttg 13170539  T
Q  379 gaccggactatagtgtcgagttattggctgaatatgtggatggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatata 478  Q
    |||||| | ||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||| ||||| ||    
T  13170540 gaccgggcgatagtgttgagttattgactgaatatgtggatggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatcta 13170639  T
Q  479 tgactctcattgttttggtttccctggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagttta 578  Q
    |||| ||||| |||  ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13170640 tgaccctcatcgttacggtttccctggtgaatatggtttaaagcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagttta 13170739  T
Q  579 gggga 583  Q
    |||||    
T  13170740 gggga 13170744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 295 - 667
Target Start/End: Original strand, 44688554 - 44688929
Alignment:
Q  295 gcatgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttggacc---ggactatag 391  Q
    ||||||||||  ||||| ||||||| || || |||||||| | ||||| |  ||| |||||||||||  ||||| |||||| |||| |   ||||| |||    
T  44688554 gcatgtcaacacactttgtagacatatgtgtttttaaagagctgttttatatagtcaataaaattggtcggacatttgcttatggagcagcggactttag 44688653  T
Q  392 tgtcgagttattggctgaatatgtggatggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgt 491  Q
    |||  |   | ||||| || |||| |||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||| ||    
T  44688654 tgtgcaacaagtggctaaacatgttgatggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggt 44688753  T
Q  492 tttggtttccctggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttt 591  Q
    ||||| ||||| |||||||||||| ||  ||||||||||||||  ||  |||||||| | ||||||||||| |||||  ||||||||||| ||||| |||    
T  44688754 tttgggttcccgggtgaagatggtctacggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattt 44688853  T
Q  592 tgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctt 667  Q
    ||||||||||||||| || ||| |||||| || ||||||||||||||||| ||| |||||| |||||||| |||||    
T  44688854 tgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaagggaattgtgtaatctt 44688929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 643 - 678
Target Start/End: Original strand, 13170758 - 13170793
Alignment:
Q  643 ttgtcaaaggaaattgtgtcatctttagtgatgatg 678  Q
    ||||||||||||||||||||||||||||||||||||    
T  13170758 ttgtcaaaggaaattgtgtcatctttagtgatgatg 13170793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 183; Significance: 1e-98; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 278 - 678
Target Start/End: Complemental strand, 18991562 - 18991165
Alignment:
Q  278 ttggacgccgatcccttgcatgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgctttt 377  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||| |||    
T  18991562 ttggacgttgatcccatgcatgtcaacgtactttctagacatctgcgtgtttaaagagcggttttatgcggttaataaaattggtaggacagttgcgttt 18991463  T
Q  378 ggaccggactatagtgtcgagttattggctgaatatgtggatggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatat 477  Q
    |||  |||||||||||| |||||| |||||||||||||| |||||||||| ||||||||| |||||||| ||||  |||||||||||||||| ||||| |    
T  18991462 ggattggactatagtgttgagttagtggctgaatatgtgaatggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatct 18991363  T
Q  478 atgactctcattgttttggtttccctggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagttt 577  Q
     |||||| ||||||||||| |||||||| ||| | ||| |||| ||  | ||||| || ||| ||||||   ||||| |||||   | || |  ||| ||    
T  18991362 gtgactcgcattgttttgggttccctggcgaaaaaggtctaaaactgaaggtgtttaggcttaatgagagaaagaaggaatgg---aggtcgaagagctt 18991266  T
Q  578 aggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgat 677  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||||| ||| |||    
T  18991265 agggaatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatttatctgttgtcaaagggaattgtgtcgtctttattgacgat 18991166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 528 - 678
Target Start/End: Complemental strand, 4428742 - 4428592
Alignment:
Q  528 gtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctg 627  Q
    ||||| || ||||||||||||| |   |||||||| || ||| ||||||| |||||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  4428742 gtgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgcctctg 4428643  T
Q  628 cttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 678  Q
    |||| || |||||||||   ||||| |||||||||||||||| ||||||||    
T  4428642 cttctgagttgtctgttactaaagggaattgtgtcatctttattgatgatg 4428592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 572 - 678
Target Start/End: Complemental strand, 4439927 - 4439821
Alignment:
Q  572 gagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 671  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| |||||||||||||||| |    
T  4439927 gagtttgggagatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttatt 4439828  T
Q  672 gatgatg 678  Q
    |||||||    
T  4439827 gatgatg 4439821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 541 - 657
Target Start/End: Complemental strand, 235311 - 235195
Alignment:
Q  541 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 640  Q
    |||| ||||||||||| ||||| |||||||| | |||||||||||||||||| |||||||||     ||||||||||||||||||||||||||||||||     
T  235311 atgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctgcttcggatttgtg 235212  T
Q  641 tgttgtcaaaggaaatt 657  Q
    ||||  |||||| ||||    
T  235211 tgttcccaaagggaatt 235195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 546 - 661
Target Start/End: Original strand, 8814385 - 8814500
Alignment:
Q  546 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttg 645  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||      ||||| |||||||||||||||| |||||||| ||||     
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcattttctgcttctgctttggatttgtgtgttc 8814484  T
Q  646 tcaaaggaaattgtgt 661  Q
     |||||| ||||||||    
T  8814485 ccaaagggaattgtgt 8814500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 548 - 665
Target Start/End: Complemental strand, 246958 - 246841
Alignment:
Q  548 ggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtc 647  Q
    ||||||||||||||| |||||||| | |||||| |||| ||||||||||||||||      || || |||||||||||||||| |||||||| ||||  |    
T  246958 ggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttgttctggtcattttctgcttctgctttggatttgtgtgttcac 246859  T
Q  648 aaaggaaattgtgtcatc 665  Q
    ||||| ||||||||||||    
T  246858 aaagggaattgtgtcatc 246841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 541 - 644
Target Start/End: Original strand, 251412 - 251515
Alignment:
Q  541 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 640  Q
    |||| ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||||     |||||| ||||||| |||||| ||||||||||     
T  251412 atgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgttcattttctgtttctgcatcggatttgtg 251511  T
Q  641 tgtt 644  Q
    ||||    
T  251512 tgtt 251515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 546 - 631
Target Start/End: Complemental strand, 231674 - 231589
Alignment:
Q  546 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 631  Q
    ||||||| ||| ||||| |||||||| | ||||||||||| ||||||||||||||||     |||||| |||||||||||||||||    
T  231674 aaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctgcttc 231589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 526 - 669
Target Start/End: Original strand, 20694304 - 20694447
Alignment:
Q  526 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 625  Q
    |||||||||| |||||||| ||||||||||||||||| |  ||| | ||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T
Q  626 tgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttta 669  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||    
T  20694404 tgcttcggatttgtgtgttgccaaagggaattgtgtcatcttta 20694447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 523 - 671
Target Start/End: Complemental strand, 7041612 - 7041464
Alignment:
Q  523 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 622  Q
    ||||| |||| | |||| |||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||  | | ||||||||| ||||     
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgt 7041513  T
Q  623 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 671  Q
    |||||||||||||||||  |||| |||||| ||||||||||||||||||    
T  7041512 ttctgcttcggatttgtgcgttgccaaagggaattgtgtcatctttagt 7041464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 541 - 677
Target Start/End: Complemental strand, 7046937 - 7046801
Alignment:
Q  541 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 640  Q
    |||||||||||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||    |||||||||||||||||||  ||| |||||||     
T  7046937 atgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttctttttcagatttgta 7046838  T
Q  641 tgttgtcaaaggaaattgtgtcatctttagtgatgat 677  Q
    ||||| |||||| |||||||| ||| |||||| ||||    
T  7046837 tgttgccaaagggaattgtgtgatcattagtgctgat 7046801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 541 - 669
Target Start/End: Complemental strand, 7025854 - 7025720
Alignment:
Q  541 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 634  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||   ||      ||||||||||||||||| |||||| ||    
T  7025854 atgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggggttggggttggtatgttcgttttctgcttgtgcttcaga 7025755  T
Q  635 tttgtctgttgtcaaaggaaattgtgtcatcttta 669  Q
    ||||| ||||| |||||| |||| |||||||||||    
T  7025754 tttgtgtgttgccaaagggaattctgtcatcttta 7025720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 541 - 669
Target Start/End: Complemental strand, 7012918 - 7012784
Alignment:
Q  541 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 634  Q
    |||||||||||||||| ||||| |||||| | |||||||| |||||  ||||||||||||||   ||      ||||||||||||||| | |||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggtatgttcgttttctgcctgtgcttcgga 7012819  T
Q  635 tttgtctgttgtcaaaggaaattgtgtcatcttta 669  Q
    ||||| ||||| |||||| |||| |||||||||||    
T  7012818 tttgtgtgttgccaaagggaattctgtcatcttta 7012784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 541 - 602
Target Start/End: Complemental strand, 7029911 - 7029850
Alignment:
Q  541 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 602  Q
    |||||||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||    
T  7029911 atgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 543 - 668
Target Start/End: Original strand, 9159515 - 9159646
Alignment:
Q  543 gagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcggatt 636  Q
    |||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||   ||      || ||||||||||| ||||||||| ||||    
T  9159515 gagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggtatattcgttttctgtttctgcttcagatt 9159614  T
Q  637 tgtctgttgtcaaaggaaattgtgtcatcttt 668  Q
    ||| ||||  |||||| |||||| ||||||||    
T  9159615 tgtgtgtttccaaagggaattgtatcatcttt 9159646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 668
Target Start/End: Complemental strand, 9170915 - 9170782
Alignment:
Q  541 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 634  Q
    |||||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||   ||      || ||||||||||| ||||||||| ||    
T  9170915 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggtatattcgttttctgtttctgcttcaga 9170816  T
Q  635 tttgtctgttgtcaaaggaaattgtgtcatcttt 668  Q
    ||||| ||||  | |||| |||||| ||||||||    
T  9170815 tttgtgtgtttcccaagggaattgtatcatcttt 9170782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 2926346 - 2926385
Alignment:
Q  179 aaaggttgttgctgtcacgtgccatgggaaaaatcctctc 218  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  2926346 aaaggttgttgttgtcacgtgccatgggaaaaaccctctc 2926385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 7041946 - 7041904
Alignment:
Q  177 ataaaggttgttgctgtcacgtgccatgggaaaaatcctctcg 219  Q
    |||||||| |||||||||||||||||||| ||||| |||||||    
T  7041946 ataaaggtcgttgctgtcacgtgccatggaaaaaaacctctcg 7041904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 9171274 - 9171234
Alignment:
Q  179 aaaggttgttgctgtcacgtgccatgggaaaaatcctctcg 219  Q
    |||||| |||||||||||||||||||| ||||| |||||||    
T  9171274 aaaggtcgttgctgtcacgtgccatggaaaaaaacctctcg 9171234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 536 - 668
Target Start/End: Complemental strand, 3695792 - 3695661
Alignment:
Q  536 acttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggat 635  Q
    |||| |||||||| ||||||| ||  ||||||||  ||||||||||||||||||||||||||| || |    |||||| |||||||||  ||||||||||    
T  3695792 acttaatgagaagaagaagaagtga-tcaagttgtagagtttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgcttcggat 3695694  T
Q  636 ttgtctgttgtcaaaggaaattgtgtcatcttt 668  Q
    ||||||| || |||||| |||||||| ||||||    
T  3695693 ttgtctgctgccaaagggaattgtgtgatcttt 3695661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 631
Target Start/End: Original strand, 450111 - 450219
Alignment:
Q  523 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 622  Q
    |||||||||| || ||||||||||||||||| || ||||||||||||  || |||||| |||| | |||||||||| ||  ||   | ||| ||||||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 450210  T
Q  623 ttctgcttc 631  Q
    |||||||||    
T  450211 ttctgcttc 450219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 537 - 661
Target Start/End: Complemental strand, 18571213 - 18571086
Alignment:
Q  537 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagtt---ttgttcttggggaatggatgttcgttttctgcttctgcttcgg 633  Q
    |||||||||||||||||||| ||||| || ||| ||||||||||||||| ||||   |||||||| || |  | | |||| ||||||  |||||||||||    
T  18571213 cttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagttgttttgttcttaggcatggcaggttctttttctatttctgcttcgg 18571114  T
Q  634 atttgtctgttgtcaaaggaaattgtgt 661  Q
    |||||| ||||  |||||| ||||||||    
T  18571113 atttgtgtgtttccaaagggaattgtgt 18571086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 541 - 668
Target Start/End: Complemental strand, 33541750 - 33541623
Alignment:
Q  541 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 640  Q
    |||||||||||| | | ||||| |||||   ||||||||| ||||  ||||||||||| |||  ||  ||||| |||||||| |||||||| ||||||||    
T  33541750 atgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgttcttaggggctgactgttccttttctgcatctgcttctgatttgtc 33541651  T
Q  641 tgttgtcaaaggaaattgtgtcatcttt 668  Q
     |||| |||||| ||||||||| |||||    
T  33541650 cgttgccaaaggtaattgtgtcctcttt 33541623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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