View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_61 (Length: 226)
Name: NF18575_low_61
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 9126347 - 9126544
Alignment:
| Q |
19 |
aatgatgaagttttaaactttggtaacatctttggaaggcaattgtcggggtcagaaaatgaaatattatgtaacttgtagtcaatttcagagacaaaga |
118 |
Q |
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| T |
9126347 |
aatgatgaagtgttaagctttggtaacatctttggaaggcaattgtccgggtcggaaaatgaaataatttgtaacttgtagtcaatttcagagacaaaga |
9126446 |
T |
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| Q |
119 |
atggaactggacctgaagtggtaggaagtgaaatcatggttttcttatttgtacaatataggcaaaactcagggtgaacacattgatcttgtgatgat |
216 |
Q |
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| T |
9126447 |
attgaactggacctgaagttgtaggaagcgaaatcatggttttctgatttgtacaatacaggcaaaactcaggataaacacattgatcttgtgatgat |
9126544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 9087341 - 9087410
Alignment:
| Q |
150 |
aatcatggttttcttattt---gtacaatataggcaaaactcagggtgaacacattgatcttgtgatgat |
216 |
Q |
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| T |
9087341 |
aatcatggttctcttatttttagtacaatataagcaaaactcaggataaacacattgatcttgtgatgat |
9087410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 8862919 - 8862966
Alignment:
| Q |
169 |
gtacaatataggcaaaactcagggtgaacacattgatcttgtgatgat |
216 |
Q |
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| T |
8862919 |
gtacaatataggcaaaactcaggatgagtacattgatcttgtgatgat |
8862966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 8866785 - 8866832
Alignment:
| Q |
169 |
gtacaatataggcaaaactcagggtgaacacattgatcttgtgatgat |
216 |
Q |
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| T |
8866785 |
gtacaatataggcaaaactcaggataaacacattcatgttgtgatgat |
8866832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 9071036 - 9071107
Alignment:
| Q |
151 |
atcatggttttcttattt---gtacaatataggcaaaactc---agggtgaacacattgatcttgtgatgat |
216 |
Q |
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| T |
9071036 |
atcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgatcttgtgatgat |
9071107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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