View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18575_low_64 (Length: 217)

Name: NF18575_low_64
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18575_low_64
NF18575_low_64
[»] chr6 (12 HSPs)
chr6 (12-202)||(31566181-31566371)
chr6 (12-140)||(33390906-33391031)
chr6 (23-147)||(33265726-33265847)
chr6 (23-147)||(33274870-33274991)
chr6 (12-138)||(33403444-33403567)
chr6 (18-140)||(33412757-33412876)
chr6 (12-138)||(33060388-33060511)
chr6 (12-138)||(33361331-33361454)
chr6 (12-133)||(33641746-33641864)
chr6 (28-140)||(33307335-33307444)
chr6 (109-139)||(33288502-33288532)
chr6 (108-140)||(9169617-9169649)
[»] chr2 (1 HSPs)
chr2 (12-138)||(17437813-17437936)
[»] scaffold1749 (1 HSPs)
scaffold1749 (23-138)||(990-1102)
[»] scaffold0428 (1 HSPs)
scaffold0428 (23-138)||(9751-9863)
[»] chr4 (2 HSPs)
chr4 (23-76)||(31501309-31501362)
chr4 (18-137)||(31496075-31496197)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 31566371 - 31566181
Alignment:
Q  12 aagaatatcaatgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagat 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31566371 aagaaaatcaatgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagat 31566272  T
Q  112 gagttgctgctgctagccatctgaataagttcaattgttaaagaactatattggaatatacaaacaaaaaggaaccgactcatttagttcc 202  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31566271 gagttactgctgctagccatctgaataagttcaattgttaaagaactatattggaatatacaaacaaaaaggaaccgactcatttagttcc 31566181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 33390906 - 33391031
Alignment:
Q  12 aagaatatcaatgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagat 111  Q
    ||||| |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||   |||| |||||||||| |||||||||| ||||    
T  33390906 aagaaaatcaatgaaattgttgcgagtgtcttcacctcggaaggtgacaaacacatcataataata---tctttttgaagaagtcacaagagctgaagat 33391002  T
Q  112 gagttgctgctgctagccatctgaataag 140  Q
    ||||||||  |||||||||||||||||||    
T  33391003 gagttgctattgctagccatctgaataag 33391031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 33265726 - 33265847
Alignment:
Q  23 tgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgct 122  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||||||||||||   |||||||||| |||||  ||||| ||| ||||||||||||| |    
T  33265726 tgaaattgttccgagtatcttcacctctgaaggtgacaaatacatcataataat---ttcttcttgatgaagtcccaagaactgaagatgagttgctggt 33265822  T
Q  123 gctagccatctgaataagttcaatt 147  Q
    |||||||||||||||||||| ||||    
T  33265823 gctagccatctgaataagttaaatt 33265847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 33274870 - 33274991
Alignment:
Q  23 tgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgct 122  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||||||||||||   |||||||||| |||||  ||||| ||| ||||||||||||| |    
T  33274870 tgaaattgttccgagtatcttcacctctgaaggtgacaaatacatcataataat---ttcttcttgatgaagtcccaagaactgaagatgagttgctggt 33274966  T
Q  123 gctagccatctgaataagttcaatt 147  Q
    |||||||||||||||||||| ||||    
T  33274967 gctagccatctgaataagttaaatt 33274991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 33403444 - 33403567
Alignment:
Q  12 aagaatatcaatgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagat 111  Q
    ||||| |||| |||||||||| ||||||||||||||||| || |||| ||| ||||| |||||||   |||||||||||||||| |||||||||| |||     
T  33403444 aagaaaatcagtgaaattgttccgagtgtcttcacctctaaaggtgataaacacatcgtaataat---ttcttcttgaagaagtcacaagagctgaagac 33403540  T
Q  112 gagttgctgctgctagccatctgaata 138  Q
    |||||||||||||||||||||||||||    
T  33403541 gagttgctgctgctagccatctgaata 33403567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 33412757 - 33412876
Alignment:
Q  18 atcaatgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttg 117  Q
    |||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||   ||||||||||||||||| |||||||||  ||||||||||    
T  33412757 atcagtgaaattgttgcgagtgtcttcacctctgaaggtgacaaacacatcataataa---tttcttcttgaagaagtcacaagagctaaagatgagttg 33412853  T
Q  118 ctgctgctagccatctgaataag 140  Q
    || ||| | ||||| ||| ||||    
T  33412854 ctactgttggccatttgattaag 33412876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 33060388 - 33060511
Alignment:
Q  12 aagaatatcaatgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagat 111  Q
    ||||| |||| |||||||||||||||| ||||||||||| || |||||||| |||||||||| ||  ||||||  ||||||||| |||||||||| ||||    
T  33060388 aagaaaatcagtgaaattgttgcgagtatcttcacctctaaaggtgacaaacacatcataatgatt-tttctt--tgaagaagtcacaagagctgaagat 33060484  T
Q  112 gagttgctgctgctagccatctgaata 138  Q
    || ||||||||||||||||||||||||    
T  33060485 gatttgctgctgctagccatctgaata 33060511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 33361331 - 33361454
Alignment:
Q  12 aagaatatcaatgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagat 111  Q
    ||||| |||| |||||||||||||||||||||||||||| ||  ||||||| |||||||||| ||  ||||||  ||||||||| |||||||||| ||||    
T  33361331 aagaaaatcagtgaaattgttgcgagtgtcttcacctctaaagatgacaaacacatcataatgatt-tttctt--tgaagaagtcacaagagctgaagat 33361427  T
Q  112 gagttgctgctgctagccatctgaata 138  Q
    |||||| ||||||||||||||||||||    
T  33361428 gagttgttgctgctagccatctgaata 33361454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 33641864 - 33641746
Alignment:
Q  12 aagaatatcaatgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagat 111  Q
    ||||| |||| | ||||||||||||||||||||||||||| | |||||||| |||||||||||||  |||||  ||||||||||||||||||||  ||||    
T  33641864 aagaaaatcagtcaaattgttgcgagtgtcttcacctctgtaggtgacaaacacatcataataat-ttttct--ttgaagaagttacaagagctaaagat 33641768  T
Q  112 gagttgctgctgctagccatct 133  Q
    ||||||||||| ||||||||||    
T  33641767 gagttgctgctactagccatct 33641746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 33307335 - 33307444
Alignment:
Q  28 ttgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgctgctag 127  Q
    |||||||||||||||||||||||||| |||||||| |||||   |||||||||  ||||||||||||| |||||||||  ||| || ||| |||||||||    
T  33307335 ttgttgcgagtgtcttcacctctgaaggtgacaaacacatc---ataatagttgtttcttgaagaagtcacaagagctaaagaagaattgttgctgctag 33307431  T
Q  128 ccatctgaataag 140  Q
    |||||||| ||||    
T  33307432 ccatctgattaag 33307444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 33288502 - 33288532
Alignment:
Q  109 gatgagttgctgctgctagccatctgaataa 139  Q
    |||||||||||||||||||||||||||||||    
T  33288502 gatgagttgctgctgctagccatctgaataa 33288532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 9169617 - 9169649
Alignment:
Q  108 agatgagttgctgctgctagccatctgaataag 140  Q
    ||||||||||||||||||||||||| |||||||    
T  9169617 agatgagttgctgctgctagccatcagaataag 9169649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 17437936 - 17437813
Alignment:
Q  12 aagaatatcaatgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagat 111  Q
    ||||| |||| |||||||||||||||| ||||||||||| || |||||||| |||||||||| ||  |||||  |||||||||| |||||||||| || |    
T  17437936 aagaaaatcagtgaaattgttgcgagtatcttcacctctaaaggtgacaaacacatcataatgat-ttttct--ttgaagaagtcacaagagctgaagtt 17437840  T
Q  112 gagttgctgctgctagccatctgaata 138  Q
    || |||||||| |||||||||||||||    
T  17437839 gatttgctgctactagccatctgaata 17437813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 990 - 1102
Alignment:
Q  23 tgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgct 122  Q
    |||||||||||||||| |||||||||||||| |||||||| || |||||| ||   ||||| ||||   |||  || ||||| ||||| |||||||||||    
T  990 tgaaattgttgcgagtatcttcacctctgaaggtgacaaacacgtcataacaa---tttctccttggcaaaggcaccagagccgtagacgagttgctgct 1086  T
Q  123 gctagccatctgaata 138  Q
    ||||||||||||||||    
T  1087 gctagccatctgaata 1102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 9751 - 9863
Alignment:
Q  23 tgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttgctgct 122  Q
    |||||||||||||||| |||||||||||||| |||||||| || |||||| ||   ||||| ||||   |||  || ||||| ||||| |||||||||||    
T  9751 tgaaattgttgcgagtatcttcacctctgaaggtgacaaacacgtcataacaa---tttctccttggcaaaggcaccagagccgtagacgagttgctgct 9847  T
Q  123 gctagccatctgaata 138  Q
    ||||||||||||||||    
T  9848 gctagccatctgaata 9863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 31501362 - 31501309
Alignment:
Q  23 tgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataat 76  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||||||    
T  31501362 tgaaattgttgcgagtgtcttcacctctaaaagtgacaaacgcatcataataat 31501309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 31496197 - 31496075
Alignment:
Q  18 atcaatgaaattgttgcgagtgtcttcacctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtaga---tgag 114  Q
    |||| ||||||||||||||||||| |||||||| || |||||||| || ||||||| || | | || ||||  || || || ||||||| |||    |||    
T  31496197 atcagtgaaattgttgcgagtgtcctcacctctaaaggtgacaaacacgtcataatgattgctcctccttggcgatgtcactagagctgaagaagtggag 31496098  T
Q  115 ttgctgctgctagccatctgaat 137  Q
    |||||||||||||||||||||||    
T  31496097 ttgctgctgctagccatctgaat 31496075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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