View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18575_low_7 (Length: 676)

Name: NF18575_low_7
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18575_low_7
NF18575_low_7
[»] chr2 (1 HSPs)
chr2 (15-659)||(36369962-36370616)


Alignment Details
Target: chr2 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 15 - 659
Target Start/End: Original strand, 36369962 - 36370616
Alignment:
Q  15 cataggacagagaaggaagaaaatgaactagctgcctcatgcgtatcgtgcaacttaagaagaaataagggtgtcaatacaagaacaatttttcct---- 110  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  36369962 catagtacagagaaggaagaaaatgaactagctacctcatgcgtatcgtgcaacttaagaagaaataagggtgtcaatacaagaacaatttttcctattt 36370061  T
Q  111 -------gatatctaaatatatacaagggctacccattttgtccaataacannnnnnnnnngaataaaaattatgattttgttgatgaaaaagacacttt 203  Q
           ||||||||||||||||||||||| ||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||    
T  36370062 ttatgatgatatctaaatatatacaagggccacccattttgtccaataacatttttttttttaataaaaattatgattttgttgatgaaaaagacacttt 36370161  T
Q  204 attaacacactagatgaatggaagaaagtccattataaccaatatgtaaatgaacatttaataaaggattaacaaccaaaaagaaactaaaattttgggc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36370162 attaacacactagatgaatggaagaaagtccattataaccaatatgtaaatgaacatttaataaaggattaacaaccaaaaagaaactaaaattttgggc 36370261  T
Q  304 acaatgaccctgatgagtccccgaatacgtacaataactagcttgtcggggcaaaattggcttaaaaaataacttgagaaagagttaagtcacaagacaa 403  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36370262 acaatgaccctgatgagtccccgaatccgtacaataactagcttgttggggcaaaattggcttaaaaaataacttgagaaagagttaagtcacaagacaa 36370361  T
Q  404 tctaataccatggagaaaaaaggccacatttcagtacaaattatattacaattactaagattgcagtagaaccctttgattaacctgtcacaaataattt 503  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36370362 tctaataccatggagaaaaaaggccacatttgagtacaaattatattacaattactaagattgcagtagaaccctttgattaacttgtcacaaataattt 36370461  T
Q  504 aaccacaagtgaaaccatcatcaagactattgctagcaccatcaacatttactttaaacaaagtttattaacgaaatgggggtgggagaatgaatgattt 603  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  36370462 aaccaaaagtgaaaccatcatcaagactattgctagcaccatctacatttactttaaacaaaatttattaacgaaat-ggggtgggagaatgaatgattt 36370560  T
Q  604 cggatcatttgaaagtgaagcccaagcccaaagaggaggagataaactatcacttt 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36370561 cggatcatttgaaagtgaagcccaagcccaaagaggaggagataaactatcacttt 36370616  T

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