View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18575_low_8 (Length: 659)
Name: NF18575_low_8
Description: NF18575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18575_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 3239293 - 3238935
Alignment:
| Q |
17 |
aattataagaaaaaagaaaattaaacaaaggcttttgcatgtgtgatcaataacattccctatatcaaaagaagtttcatataatgatgagaaatggatc |
116 |
Q |
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| T |
3239293 |
aattataagaaaaaaggaaattgaacaaaggcttttgcatgtgtgatcaataacattccctatatcaaaagaagtttcata--atgatgagaaatggatc |
3239196 |
T |
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| Q |
117 |
caaaatcaatggcttctggatttgaaggaataaccatcttcctcatttcaatgtttttatagctccttcaacatcttaattctcttcaaaggtactccta |
216 |
Q |
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| T |
3239195 |
caaaatcaatggcttctggatttgaaggaataaccatcttcctcatttcaatgtttttatagctccttcaacgtcttaattctcttcaaaggtactccta |
3239096 |
T |
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| Q |
217 |
ttgttttatttattttttctctgatcatgtttacccttaacaattttcttaatctccacattaatatgacaacaaattaattaatcatctttgtattctt |
316 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3239095 |
ttgttttatttattttatctctgatcatgtttacccttaacaattttcttaatctccacattaatatgacaacaaattaattaatcatctttgtattctt |
3238996 |
T |
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| Q |
317 |
ataatcaaataccaatcttcaatcattcatattatagactaatataggaaaggttcctctt |
377 |
Q |
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| T |
3238995 |
ataatcaaataccaatcttcaatcattcatattatagactaatataggaaaggttcctctt |
3238935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 362 - 649
Target Start/End: Complemental strand, 3238917 - 3238630
Alignment:
| Q |
362 |
aggaaaggttcctcttaaatcacatgcattgaactcatcccttttattgaattcataattgtgtacaatatttaattattcannnnnnnatgaccaaagt |
461 |
Q |
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| T |
3238917 |
aggaaaggttcctcttaaatcacatgcattgaactaatcccttttattgaattcataattgtgtacaatatttaattattcatttttttatgaccaaagt |
3238818 |
T |
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| Q |
462 |
ttaatcatgcatattcatattgtgacaggcaacaaaagcattaaaattaggatttttgcttctacattttgccattctaataggctaccatattgagctt |
561 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238817 |
ttaatcatgcatattcatattgtgacaggcaacaaaagcattaaaattaggatttttgcttctacattttgccattctaataggctaccatattgagctt |
3238718 |
T |
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| Q |
562 |
gggtttgtgattccaccatgacgattaaagggatctacaaaagttttaagtacatatcccaaatttttggtaatttatctatcctttg |
649 |
Q |
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| T |
3238717 |
gggtttgtgattccaccatgacgattaaagggatctacaaaagttttaagtacatatcccaaatttttggtaatttatctatcctttg |
3238630 |
T |
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