View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18576_high_10 (Length: 278)
Name: NF18576_high_10
Description: NF18576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18576_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 57 - 260
Target Start/End: Complemental strand, 35121337 - 35121137
Alignment:
| Q |
57 |
acattttccaaccgagtgcagaaatatatgaaaggaacattaaaagggtacatgacttgttcggtcaaagaaaaagagaacatttgtattttacaatata |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35121337 |
acattttccaaccgagtgcagaaatatatgaaaggaacattaaaagggtacatgacttgttcggtcaaagaaaaagagaacatttgtattttacaatata |
35121238 |
T |
|
| Q |
157 |
agnnnnnnnnnnnnngacaaaacaatagtataagttaattattcattaactaaatgataatttttagtcaaactaatataatataatgacagaattttat |
256 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35121237 |
agttttttgttttttgacaaaacaa---tataagttaattattcattaactaaatgataatttttagtcaaactaatataatataatgacagaattttat |
35121141 |
T |
|
| Q |
257 |
acct |
260 |
Q |
| |
|
|||| |
|
|
| T |
35121140 |
acct |
35121137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University