View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18576_high_14 (Length: 250)
Name: NF18576_high_14
Description: NF18576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18576_high_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 28570291 - 28570529
Alignment:
| Q |
12 |
aatactatgagctatcctatttatttgcctcttgataaatgacactacatagtcggaattattagataagagacttttacattcagatactaagtcacca |
111 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
28570291 |
aatacaatgagctaccctatttatttgcctcttgataaatgacactacatagtcgggattattagataagagacttatacattcagatattaagtcacca |
28570390 |
T |
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| Q |
112 |
aattcattacatgaaacattgtaagcttgaagcgaggctaccaaagttttgctatccatttcaaacataacatcattacgcaaatcgttggatattgcca |
211 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28570391 |
aattcattacatgaaacattgggagcttgaagcgaggctaccaaagttttgctatccgtttcaaacataacatcattacgcaaatcgttggatattgcca |
28570490 |
T |
|
| Q |
212 |
ttttgagagagtggagaagaccaagggatttcacttcca |
250 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
28570491 |
ttttcagagagtggagaagaccaagggatttcacttcca |
28570529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 19132940 - 19132833
Alignment:
| Q |
12 |
aatactatgagctatcctatttatttgcctcttgataaatgacactacatagtcggaattattagataagagacttttacattcagatactaagtcacca |
111 |
Q |
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|||||||||||||| ||| ||| |||||||| | | || ||||||||||||| ||||||| || |||||||||| |||||||||||||| | ||||||| |
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| T |
19132940 |
aatactatgagctaccctgtttgtttgcctcctaacgaacgacactacatagttggaattactaaataagagactcttacattcagataccaggtcacca |
19132841 |
T |
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| Q |
112 |
aattcatt |
119 |
Q |
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||||||| |
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| T |
19132840 |
tattcatt |
19132833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 43733958 - 43733732
Alignment:
| Q |
12 |
aatactatgagctatcctatttatttgcctcttgataaatgacactacatagtcggaattattagataagagacttttacattcagatactaagtcacca |
111 |
Q |
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|||||||||||||| | ||||| ||||||||||||||| |||| ||||||||||| |||| |||| || ||||| |||||||||||||||||||||||| |
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| T |
43733958 |
aatactatgagctaccatatttgcttgcctcttgataaacgacattacatagtcgggattactagacaaaagactcttacattcagatactaagtcacca |
43733859 |
T |
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| Q |
112 |
aattcattacatgaaacattgtaagcttgaagcgaggctaccaaagttttgctatccatttcaaacataacatcattacgcaaatcgttggatattgcca |
211 |
Q |
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||||||||||||| ||||||| |||||||| || || ||||||||||||||||||| |||||||||| | ||||||||||| |||||| ||||||| |
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| T |
43733858 |
aattcattacatggaacattgggagcttgaaacgtggttaccaaagttttgctatccgtttcaaacatta---cattacgcaaactgttggacattgcca |
43733762 |
T |
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| Q |
212 |
ttttgagagagtggagaagaccaagggatt |
241 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43733761 |
ttttgagagagtggagaagaccaagggatt |
43733732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 54657892 - 54657675
Alignment:
| Q |
24 |
tatcctatttatttgcctcttgataaatgacactacatagtcggaattattagataagagacttttacat---tcagatactaagtcaccaaattcatta |
120 |
Q |
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|||| ||||| |||| ||||| ||||| || |||||||||||| ||||||||||||||||||| |||||| |||||||| |||||| |||||| |||| |
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| T |
54657892 |
tatcatatttgtttgtctctttataaacgatactacatagtcgaaattattagataagagactcttacatatttcagataccaagtcatcaaatttatta |
54657793 |
T |
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| Q |
121 |
catgaaacattgtaagcttgaagcgaggctaccaaagttttgctatccatttcaaacataacatcattacgcaaatcgttggatattgccattttgagag |
220 |
Q |
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|||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
54657792 |
catggaacattgagagcttgaagcgcagctaccaaagttttgctatccgtttcaaacataa---cattatgcaaatcgttggatatcgccattttgagaa |
54657696 |
T |
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| Q |
221 |
agtggagaagaccaagggatt |
241 |
Q |
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| T |
54657695 |
agtggagaagaccaagggatt |
54657675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 42702951 - 42702990
Alignment:
| Q |
202 |
gatattgccattttgagagagtggagaagaccaagggatt |
241 |
Q |
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|||||||||||||| |||||||||||||||||||| |||| |
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| T |
42702951 |
gatattgccatttttagagagtggagaagaccaagagatt |
42702990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 32195748 - 32195700
Alignment:
| Q |
52 |
gacactacatagtcggaattattagataagagacttttacattcagata |
100 |
Q |
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| T |
32195748 |
gacactaaatagtcgggattactacataagagactcttacattcagata |
32195700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 42700160 - 42700220
Alignment:
| Q |
12 |
aatactatgagctatcctatttatttgcctcttgataaatgacactacatagtcggaatta |
72 |
Q |
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|||||||||||||| ||||||| |||||||| | | ||| ||||||||||| |||| |||| |
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| T |
42700160 |
aatactatgagctaccctatttgtttgcctcataacaaacgacactacataatcgggatta |
42700220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 9581926 - 9581882
Alignment:
| Q |
52 |
gacactacatagtcggaattattagataagagacttttacattca |
96 |
Q |
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||||||||||||||||||||||| |||| ||||| ||||||||| |
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| T |
9581926 |
gacactacatagtcggaattattgcataaaagactcttacattca |
9581882 |
T |
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