View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18576_high_18 (Length: 230)

Name: NF18576_high_18
Description: NF18576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18576_high_18
NF18576_high_18
[»] chr3 (2 HSPs)
chr3 (47-214)||(49144775-49144942)
chr3 (45-114)||(20313368-20313437)
[»] chr7 (3 HSPs)
chr7 (45-137)||(47799295-47799387)
chr7 (45-133)||(6899-6987)
chr7 (45-114)||(48955179-48955248)
[»] chr4 (1 HSPs)
chr4 (43-134)||(1013364-1013455)
[»] chr6 (1 HSPs)
chr6 (45-121)||(21983235-21983311)
[»] chr8 (2 HSPs)
chr8 (45-128)||(42112455-42112538)
chr8 (64-140)||(28091436-28091513)
[»] chr2 (1 HSPs)
chr2 (45-134)||(2501799-2501891)
[»] chr5 (1 HSPs)
chr5 (45-114)||(5766801-5766870)
[»] chr1 (2 HSPs)
chr1 (55-126)||(14285832-14285903)
chr1 (38-88)||(42645364-42645414)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 47 - 214
Target Start/End: Original strand, 49144775 - 49144942
Alignment:
Q  47 aaagttgaatttttactattaaattaaagaggtgtattgatcatctcatggtctatctacacattattcatcctctagatctagaattctacacgagagt 146  Q
    |||||||||||||||  |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49144775 aaagttgaatttttatcattagattaaagaggtgtattgatcatatcatggtctatctacacattattcatcctctagatctagaattctacacgagagt 49144874  T
Q  147 aaaatgatcttccacccctctctattccattattccatgtcccccctcacccaccaccaccatcaaac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49144875 aaaatgatcttccacccctctctattccattattccatgtcccccctcacccaccaccaccatcaaac 49144942  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 20313437 - 20313368
Alignment:
Q  45 ggaaagttgaatttttactattaaattaaagaggtgtattgatcatctcatggtctatctacacattatt 114  Q
    ||||| ||| |||||||| |||| |||||||||||||||||||| | | |||||||| |||||| |||||    
T  20313437 ggaaaattggatttttaccattagattaaagaggtgtattgatcttataatggtctacctacactttatt 20313368  T

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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 47799295 - 47799387
Alignment:
Q  45 ggaaagttgaatttttactattaaattaaagaggtgtattgatcatctcatggtctatctacacattattcatcctctagatctagaattcta 137  Q
    ||||||||  |||||||| |||| |||||||||||||||||||| | |||||||||| || ||| ||||||||||| ||||||||||||||||    
T  47799295 ggaaagtttgatttttaccattagattaaagaggtgtattgatcttatcatggtctacctgcactttattcatcctttagatctagaattcta 47799387  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 6899 - 6987
Alignment:
Q  45 ggaaagttgaatttttactattaaattaaagaggtgtattgatcatctcatggtctatctacacattattcatcctctagatctagaat 133  Q
    ||||||||| ||||| || |||| |||||||||||||||||||| | |||| ||||| ||  ||  |||||||| ||||||||||||||    
T  6899 ggaaagttggattttcaccattagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttctagatctagaat 6987  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 48955248 - 48955179
Alignment:
Q  45 ggaaagttgaatttttactattaaattaaagaggtgtattgatcatctcatggtctatctacacattatt 114  Q
    ||||||||  |||||||| || | |||||||||||||||||||| | | |||||||| |||||| |||||    
T  48955248 ggaaagtttgatttttaccatcagattaaagaggtgtattgatcttataatggtctacctacactttatt 48955179  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 134
Target Start/End: Original strand, 1013364 - 1013455
Alignment:
Q  43 taggaaagttgaatttttactattaaattaaagaggtgtattgatcatctcatggtctatctacacattattcatcctctagatctagaatt 134  Q
    ||||||||||| |||||||| |||| ||||||||| |||||||||| |  |||||||| |||| |||||||||||||||||||||| |||||    
T  1013364 taggaaagttggatttttaccattagattaaagagctgtattgatcttaccatggtctttctatacattattcatcctctagatctggaatt 1013455  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 21983311 - 21983235
Alignment:
Q  45 ggaaagttgaatttttactattaaattaaagaggtgtattgatcatctcatggtctatctacacattattcatcctc 121  Q
    ||||| |||||||| ||| |||| |||||||||||||||||||| | |||||||||| ||| |  ||||||||||||    
T  21983311 ggaaatttgaatttctaccattagattaaagaggtgtattgatcttatcatggtctacctatattttattcatcctc 21983235  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 42112538 - 42112455
Alignment:
Q  45 ggaaagttgaatttttactattaaattaaagaggtgtattgatcatctcatggtctatctacacattattcatcctctagatct 128  Q
    |||||||| || |||||| | || |||||||||||||||||||| |  ||||||||| ||| || ||||||||| |||||||||    
T  42112538 ggaaagttaaaattttaccaatagattaaagaggtgtattgatcttaccatggtctacctatactttattcatcatctagatct 42112455  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 28091436 - 28091513
Alignment:
Q  64 attaaattaaagaggtgtattgatcatctcatggtctatctacacattattcatcctct-agatctagaattctacac 140  Q
    |||||||||| |||||||||||||| | |||||||| | | | || ||||||||||||| |||||| ||||| |||||    
T  28091436 attaaattaatgaggtgtattgatcttatcatggtccacccatactttattcatcctctaagatctggaattttacac 28091513  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 2501799 - 2501891
Alignment:
Q  45 ggaaagttgaatttttactattaaattaaagaggtgtattgatcatctcatggtctatctacacattat---tcatcctctagatctagaatt 134  Q
    |||||||||||||||||| |||  |||||| ||||||||||||| | ||||||||| ||| ||| ||||   ||||||| ||||||| |||||    
T  2501799 ggaaagttgaatttttaccatttgattaaaaaggtgtattgatcttatcatggtctctctgcactttataaatcatcctttagatctggaatt 2501891  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 5766870 - 5766801
Alignment:
Q  45 ggaaagttgaatttttactattaaattaaagaggtgtattgatcatctcatggtctatctacacattatt 114  Q
    ||||||||| |||||||| || | |||||||||||||||||||| | | |||||||| |||||| |||||    
T  5766870 ggaaagttggatttttaccatcagattaaagaggtgtattgatcttataatggtctacctacactttatt 5766801  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 14285903 - 14285832
Alignment:
Q  55 atttttactattaaattaaagaggtgtattgatcatctcatggtctatctacacattattcatcctctagat 126  Q
    |||||||| |||| |||||| ||||||||||| | | |||||||||| ||| || ||| |||||||||||||    
T  14285903 atttttaccattagattaaacaggtgtattgaacttatcatggtctacctatactttaatcatcctctagat 14285832  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 42645364 - 42645414
Alignment:
Q  38 catcgtaggaaagttgaatttttactattaaattaaagaggtgtattgatc 88  Q
    |||||| ||||||||| ||||| || |||| ||||||||||||||||||||    
T  42645364 catcgtgggaaagttggattttcaccattagattaaagaggtgtattgatc 42645414  T

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