View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18576_high_20 (Length: 229)
Name: NF18576_high_20
Description: NF18576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18576_high_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 46278387 - 46278165
Alignment:
| Q |
7 |
tgttaggcttagatgaatatagaaactaattttataattggatgcatgatgaaatttggnnnnnnnattggcaaaatatagtagtagctagttgtagttt |
106 |
Q |
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| T |
46278387 |
tgttaggcttagatgaatatagaaactaattttataattggatgcatgatgaaatttggtttttttattggcaaaatatagtagtagctagttgtagttt |
46278288 |
T |
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| Q |
107 |
ttgttataagttgtttacacataagtttaaaattagaatagattaattacctgcatattaattccttgaaggttagggtgatgaagtggaagagtggtgc |
206 |
Q |
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| T |
46278287 |
ttgttataagttgtttacacataagtttaaaattagaatagattaattacctgcatattaattccttgaaggttagggtgatgaagtggaagagtggtgc |
46278188 |
T |
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| Q |
207 |
atatatcacctagcagaacttgt |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
46278187 |
atatatcacctagcagaacttgt |
46278165 |
T |
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