View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18576_low_1 (Length: 1427)
Name: NF18576_low_1
Description: NF18576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18576_low_1 |
 | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 646; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 12 - 773
Target Start/End: Original strand, 40516664 - 40517425
Alignment:
| Q |
12 |
catcatcatatgtctcttgagctcaggactttcactcatcaaaattattgtgcaacaagcaagtcactcatcaaaactattgtgcaatatgtgtgtcgga |
111 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||| || |
|
|
| T |
40516664 |
catcatcatatgtctcttgagctgaggactttcactcatcaaaattattgtgcaacaagcaattcactcatcaaaattattgttcaacatgtgtgtcaga |
40516763 |
T |
|
| Q |
112 |
atcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattcaaacacacgcacattgataccaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
40516764 |
atcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctataaaatcatagtaggttgtcgtgattcaaacacacgcacagtgataccaa |
40516863 |
T |
|
| Q |
212 |
atatatatttaatgctctgtaagtagatagattttcactactctatttgattgaattaaaacagtaagtttgaggtttataacgaaacatttgagcatag |
311 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40516864 |
atatatacttaatgctctgcaagtagatagattttcactactctatttgattgaattaaaacagtaaatttgaggtttataacgaaacatttgagcatag |
40516963 |
T |
|
| Q |
312 |
tactgctcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacataataaacaatatataaactgcacaa |
411 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40516964 |
tactggtcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacataataaacaatatataaactgcacaa |
40517063 |
T |
|
| Q |
412 |
ggcaagcgggtaataaactgcgccgccaggcctttttggatggtatagtacttgcattcgggttatccaaatctcaacaattccaactaatgatactcaa |
511 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40517064 |
ggcaagcaggtaataaactgcgccgtcaggcctttttggatggcatagtacttgcattcgggttatccaaatctcaacaattccaactaatgatactcaa |
40517163 |
T |
|
| Q |
512 |
tactcttggcagaagaccgggaaacaatgacttgccaataaaaaatgctgaaactgtaggcttgagcttacatttgcagtgttattttttcccacttgca |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40517164 |
tactcttggcagaagaccgggaaacaatgacttgcgcataaaaaatgctgaaactgtgggcatgagcttacatttgcagtgttattttttcccacttgca |
40517263 |
T |
|
| Q |
612 |
tggctacacattaattgtcattccgatcctaatcttcctctcnnnnnnnncttcttccaagttttaacaacgtgcactccatcatgggtgtaattgcgag |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40517264 |
tggctacacattaattgtcattccgatcctaatcttcctctcttttttttcttcttccaagttttaacaacgtgcactccatcatgggtgtaattgcgag |
40517363 |
T |
|
| Q |
712 |
agcatatatgtaattaattccgagagcatatcataaacgttgacaccatatataattgcctt |
773 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40517364 |
atcatatatttaattaattccgagagcatatcataaacgttgacaccatatataattgcctt |
40517425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 764 - 1412
Target Start/End: Original strand, 40517983 - 40518633
Alignment:
| Q |
764 |
taattgccttgcctttatcatccgcagccaatgaattaattcctccttaatactataatttacgaaataggatatgctctcctgcatctataaatactaa |
863 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40517983 |
taattgccttgcctttatcatccgcagccaatgaattaattcctccttaatactataatttacgaaataggatatgctctcttgcatctataaatactaa |
40518082 |
T |
|
| Q |
864 |
tatctcgagttggatagagttataatataccatgaaaaattcctctcacgactagtagttaaatctggttccataactagttaaaatagatgagacccga |
963 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40518083 |
tatctcgagttggatagagttataatatacgatgaaaaattcctctcacgactagtagttaaatctggttccataactagttaaaatagatgagacccga |
40518182 |
T |
|
| Q |
964 |
actatcttatacaattgaaaattaaataatctaacgtgcgcatatatattgatgataatatgccaggatcatcccatgtccgtaatttctcccttgctag |
1063 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40518183 |
actatcttatacaattgaaaattaaataatctaatgtgcgcatatatattgatgataatatgccaggatcatcccatgtccgtaatttttcccttgctag |
40518282 |
T |
|
| Q |
1064 |
tttgatggtgtcctc--atgcaaggtttggaatcatgatttggctcatcaaattttcagcctagctattgcttctattattatgcgactcctctgtttga |
1161 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40518283 |
tttgacggtgtcctctcatgcaaggtttggaatcatgatttggctcatcaaattttcagcctagctattgcttatattattatgcgactcctctgtttga |
40518382 |
T |
|
| Q |
1162 |
acagaggtacttgatgacaaactgattcggaaagtcgaaaagggtgtgaagtattccgtaaaaagtgtgtacatgctctgtatggagggtttggtggaca |
1261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40518383 |
acagaggtacttgatgacaaactgattcggaaagtcgaaaaggatgtgaagtattccgtaaaaagtgtgtacatgctctgtatggagggtttggtggaca |
40518482 |
T |
|
| Q |
1262 |
tatctcatcttcaaaggccatgcttcttgtccgacattttgcatttaaacatcccttcgaaattaaaaaatttagtttggcaaatgtgtcgtcgttgttt |
1361 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40518483 |
tatctcatcttcaaaggccatgcttctggtccgacatttggcatttaaacatccctccgaaattaaaaaatttagtttggcaaatgtgtcgtcgttgttt |
40518582 |
T |
|
| Q |
1362 |
gcccacacgagtttacttgtaggataaatgtattcaataccctacaaattg |
1412 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40518583 |
gcccacacgagtttgcttgtaggataaatgtattcaataccctacaaattg |
40518633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 42910523 - 42910475
Alignment:
| Q |
123 |
ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcaca |
171 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
42910523 |
ccaccgtgatttttcaaaagctgcactttgtagcttctacaaaatcaca |
42910475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 5173845 - 5173786
Alignment:
| Q |
129 |
tgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattc |
188 |
Q |
| |
|
|||||||| |||| ||||| |||||||||||||||||||||| |||| | ||||||||| |
|
|
| T |
5173845 |
tgatttttaaaaatctacattttgtagcttctgtaaaatcacggtagatcaccgtgattc |
5173786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 8825465 - 8825506
Alignment:
| Q |
128 |
atgatttttcaaaagctacactttgtagcttctgtaaaatca |
169 |
Q |
| |
|
||||||||| |||||||||| |||||| |||||||||||||| |
|
|
| T |
8825465 |
atgattttttaaaagctacattttgtaacttctgtaaaatca |
8825506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 2e-25; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 39900936 - 39900868
Alignment:
| Q |
318 |
tcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacat |
386 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39900936 |
tcccatgcatgatactctacattgcattattcacattttcatcacgtaatgatggttaagactccacat |
39900868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 39887629 - 39887697
Alignment:
| Q |
105 |
tgtcggaatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcacagt |
173 |
Q |
| |
|
|||| |||||| || | |||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39887629 |
tgtcagaatcatggcgacccaccgtgattttccaaaagctacactttgtagcttctgcaaaatcacagt |
39887697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 36729584 - 36729629
Alignment:
| Q |
124 |
caccatgatttttcaaaagctacactttgtagcttctgtaaaatca |
169 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || |||||||||| |
|
|
| T |
36729584 |
caccatgattttgcaaaagctacactttgtaggttttgtaaaatca |
36729629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 47430808 - 47430762
Alignment:
| Q |
123 |
ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca |
169 |
Q |
| |
|
|||| ||||||||| ||||||||||||| |||||||||| ||||||| |
|
|
| T |
47430808 |
ccacaatgatttttaaaaagctacacttggtagcttctgcaaaatca |
47430762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 43049436 - 43049503
Alignment:
| Q |
129 |
tgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattcaaacacac |
196 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||| || ||| |||||||||||| ||||| |
|
|
| T |
43049436 |
tgattttttaaaagctacactttgtagcttctgcaaaatcatggtgggtcgccgtgattcaagcacac |
43049503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 38577986 - 38577926
Alignment:
| Q |
110 |
gaatcaaggtggcccaccatgatttttcaaaagctacactttgtagc-ttctgtaaaatca |
169 |
Q |
| |
|
|||||| | ||| ||||| ||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
38577986 |
gaatcacgttggtccaccttgattttccaaaagctacactttgtagctttctgtaaaatca |
38577926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 13697233 - 13697275
Alignment:
| Q |
129 |
tgatttttcaaaagctacactttgtagcttctgtaaaatcaca |
171 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
13697233 |
tgatttttcaaaagctacactgtgtagcttcagcaaaatcaca |
13697275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 172529 - 172566
Alignment:
| Q |
123 |
ccaccatgatttttcaaaagctacactttgtagcttct |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
172529 |
ccaccatgatttttcaaaagctacactttgtagcttct |
172566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 4030293 - 4030229
Alignment:
| Q |
105 |
tgtcggaatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca |
169 |
Q |
| |
|
|||| |||||| ||||| |||| | ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4030293 |
tgtcagaatcacggtggtccactgtaatttttcaaaagctacactttgtagcttctgcaaaatca |
4030229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 3631174 - 3631221
Alignment:
| Q |
122 |
cccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca |
169 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
3631174 |
cccatcatgatttttcaaaagatacactttgtaacttctgtaaaatca |
3631221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 28431397 - 28431430
Alignment:
| Q |
123 |
ccaccatgatttttcaaaagctacactttgtagc |
156 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
28431397 |
ccaccatgatttttcaaaagctacactttatagc |
28431430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 30746165 - 30746107
Alignment:
| Q |
111 |
aatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca |
169 |
Q |
| |
|
||||||| || |||||||||||||||||||| | ||||||||||| ||||| ||||||| |
|
|
| T |
30746165 |
aatcaagatgacccaccatgatttttcaaaaacaacactttgtaggttctgcaaaatca |
30746107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 32028235 - 32028282
Alignment:
| Q |
123 |
ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcac |
170 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| || |||||||| |
|
|
| T |
32028235 |
ccactatgatttttcaaaagctacactttatagcttatgcaaaatcac |
32028282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 36114915 - 36114948
Alignment:
| Q |
128 |
atgatttttcaaaagctacactttgtagcttctg |
161 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
36114915 |
atgatttttcaaaagctacactttatagcttctg |
36114948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1231 - 1288
Target Start/End: Original strand, 41837233 - 41837290
Alignment:
| Q |
1231 |
tacatgctctgtatggagggtttggtggacatatctcatcttcaaaggccatgcttct |
1288 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||||||||||||||| | |||||| |
|
|
| T |
41837233 |
tacatgctttgtatggagggtttggcggacacctctcatcttcaaaggctaggcttct |
41837290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 16244966 - 16244926
Alignment:
| Q |
129 |
tgatttttcaaaagctacactttgtagcttctgtaaaatca |
169 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
16244966 |
tgattttccaaaagctacactctgtagcttctgtaaaatca |
16244926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 36322714 - 36322762
Alignment:
| Q |
122 |
cccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcac |
170 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
36322714 |
cccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcac |
36322762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 9436165 - 9436122
Alignment:
| Q |
122 |
cccaccatgatttttcaaaagctacactttgtagcttctgtaaa |
165 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
9436165 |
cccactatgatttttcaaaaactacactttgtagtttctgtaaa |
9436122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University