View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18576_low_10 (Length: 287)

Name: NF18576_low_10
Description: NF18576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18576_low_10
NF18576_low_10
[»] chr4 (3 HSPs)
chr4 (1-269)||(2874335-2874603)
chr4 (111-269)||(2900477-2900635)
chr4 (111-267)||(2884331-2884487)
[»] chr2 (3 HSPs)
chr2 (117-267)||(44213180-44213330)
chr2 (117-267)||(44225341-44225491)
chr2 (117-267)||(44236155-44236305)
[»] chr1 (1 HSPs)
chr1 (118-269)||(2151409-2151560)
[»] chr8 (1 HSPs)
chr8 (172-255)||(4498067-4498150)
[»] chr7 (6 HSPs)
chr7 (143-269)||(39550630-39550756)
chr7 (155-269)||(39360866-39360980)
chr7 (119-189)||(39567399-39567469)
chr7 (155-269)||(42135562-42135676)
chr7 (143-255)||(39541372-39541484)
chr7 (177-269)||(39577264-39577356)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 2874603 - 2874335
Alignment:
Q  1 tacggaacattcctacaagtgtttatgtcagtaataagctcgtataaatcgatccaaataggccctttgtagctaaatgctcataagcacttctgtagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  2874603 tacggaacattcctacaagtgtttatgtcagtaataagctcatataaattgatccaaataggcccttagtaactaaatgctcataagcacttctatagat 2874504  T
Q  101 gtatatgcattttgacttacttcttgaaggaaatcagcaacgcctttcctctcgggacatttgaaaccaatagattcaaaaaattcaagaacattttcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2874503 gtatatgcattttgacttacttcttgaaggaaatcagcaacgcctttcctctcaggacatttgaaaccaatagattcaaaaaattcaagaacattttcac 2874404  T
Q  201 gaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctg 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874403 gaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctg 2874335  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 111 - 269
Target Start/End: Original strand, 2900477 - 2900635
Alignment:
Q  111 tttgacttacttcttgaaggaaatcagcaacgcctttcctctcgggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttg 210  Q
    ||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||  ||||||||||| |||||||||| |||||| ||||||||    
T  2900477 tttgacttacttcttgaagaaagtcagctacccctttcctctcaggacatttgaaaccaactgattcaaaaaagtcaagaacatgttcacgcggtccttg 2900576  T
Q  211 gtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctg 269  Q
     || ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||    
T  2900577 atagacaatttgaccatcggatataagaataatgtcatcaaaaagttcataagtctctg 2900635  T

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Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 111 - 267
Target Start/End: Complemental strand, 2884487 - 2884331
Alignment:
Q  111 tttgacttacttcttgaaggaaatcagcaacgcctttcctctcgggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttg 210  Q
    ||||||||||||||||||| || || ||  | ||||||||||| ||||||||||||||||  ||||||||||||||||||| || ||| |||||||||||    
T  2884487 tttgacttacttcttgaagaaagtccgctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttg 2884388  T
Q  211 gtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctc 267  Q
    ||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  2884387 gtagacaatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctc 2884331  T

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Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 117 - 267
Target Start/End: Original strand, 44213180 - 44213330
Alignment:
Q  117 ttacttcttgaaggaaatcagcaacgcctttcctctcgggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaac 216  Q
    ||||||||||||| ||||||||||| |||||||| || |||||||||||||| |||||||| ||||| |||||||||| ||| || || || ||||| ||    
T  44213180 ttacttcttgaagaaaatcagcaacacctttcctttcaggacatttgaaacccatagattcgaaaaagtcaagaacatattcgcgggggccatggtatac 44213279  T
Q  217 aatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctc 267  Q
    || ||  ||||||||||  |  ||||||||||||||||| |||||||||||    
T  44213280 aacttggccatcagatattaagataatgtcatcaaaaagatcataagtctc 44213330  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 267
Target Start/End: Original strand, 44225341 - 44225491
Alignment:
Q  117 ttacttcttgaaggaaatcagcaacgcctttcctctcgggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaac 216  Q
    ||||||||||||| || |||||| | |||||||| || |||||||||||||| || | ||||||||| |||||||||| ||| || || || ||||| ||    
T  44225341 ttacttcttgaagaaagtcagcagcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac 44225440  T
Q  217 aatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctc 267  Q
    || ||  |||||||| |  |  ||||||||||||||||| |||||||||||    
T  44225441 aacttggccatcagaaattaagataatgtcatcaaaaagatcataagtctc 44225491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 267
Target Start/End: Original strand, 44236155 - 44236305
Alignment:
Q  117 ttacttcttgaaggaaatcagcaacgcctttcctctcgggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaac 216  Q
    ||||||||||||| || |||||  | |||||||| || |||||||||||||| || | ||||||||| |||||||||| ||| || || || ||||| ||    
T  44236155 ttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac 44236254  T
Q  217 aatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctc 267  Q
    || ||  |||||||| |  |  ||||||||||||||||| |||||||||||    
T  44236255 aacttggccatcagagattaagataatgtcatcaaaaagatcataagtctc 44236305  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 269
Target Start/End: Original strand, 2151409 - 2151560
Alignment:
Q  118 tacttcttgaaggaaatcagcaacgcctttcctctcgggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaaca 217  Q
    ||||||||| | |||||||||||||||||| || |||||||| ||||||||  | ||||||||||| || || |||| ||| |  |||||||| || |||    
T  2151409 tacttcttgtaagaaatcagcaacgccttttctttcgggacacttgaaacctgtcgattcaaaaaactctagtacatattctcttggtccttgatacaca 2151508  T
Q  218 atttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctg 269  Q
    ||||  |||||||  | ||| || || |||||||| ||||||||||| ||||    
T  2151509 atttgtccatcagtgagaagtattatatcatcaaatagttcataagtttctg 2151560  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 4498150 - 4498067
Alignment:
Q  172 agattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaag 255  Q
    ||||||||| ||||||| ||  | |||||| || |||||||| |||| || ||| ||||||| |||||||||||||||||||||    
T  4498150 agattcaaagaattcaacaatgtgttcacgtggaccttggtacacaacttgaccctcagatataagaataatgtcatcaaaaag 4498067  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 269
Target Start/End: Original strand, 39550630 - 39550756
Alignment:
Q  143 cctttcctctcgggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataa 242  Q
    |||||||| || |||||||| |||||||| ||||| ||||||||||| || |  ||||| || |||||||| | ||| | || |||||| |  |||||||    
T  39550630 cctttcctatcaggacatttaaaaccaattgattcgaaaaattcaagcacgtgctcacggggaccttggtatataatgtgactatcagagagtagaataa 39550729  T
Q  243 tgtcatcaaaaagttcataagtctctg 269  Q
    |||| |||||||| |  ||||||||||    
T  39550730 tgtcgtcaaaaagattgtaagtctctg 39550756  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 39360980 - 39360866
Alignment:
Q  155 ggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaa 254  Q
    |||||||| |||||||| ||||| ||||||||||| || | ||| || || |||||||||| ||| | || |||||| |  || |||||||| |||||||    
T  39360980 ggacatttaaaaccaattgattcgaaaaattcaagcacgtgttcccggggaccttggtaaataatgtgactatcagagagtagtataatgtcgtcaaaaa 39360881  T
Q  255 gttcataagtctctg 269  Q
    | |  ||||||||||    
T  39360880 gattgtaagtctctg 39360866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 39567399 - 39567469
Alignment:
Q  119 acttcttgaaggaaatcagcaacgcctttcctctcgggacatttgaaaccaatagattcaaaaaattcaag 189  Q
    |||||||| | |||||| || || |||||||| || |||||||| ||||| || |||||||||||||||||    
T  39567399 acttcttgcaagaaatctgccactcctttcctatctggacatttaaaaccgattgattcaaaaaattcaag 39567469  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 269
Target Start/End: Original strand, 42135562 - 42135676
Alignment:
Q  155 ggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaa 254  Q
    |||||||||||||| || | ||||||||| |  |  |||||||| || ||||||||||| ||||||| ||| || || |  || |||||||||||||| |    
T  42135562 ggacatttgaaaccgatggtttcaaaaaactgtaacacattttcgcgtggtccttggtatacaatttgaccttctgaaagtaggataatgtcatcaaaga 42135661  T
Q  255 gttcataagtctctg 269  Q
    ||||| | |||||||    
T  42135662 gttcaaatgtctctg 42135676  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 255
Target Start/End: Original strand, 39541372 - 39541484
Alignment:
Q  143 cctttcctctcgggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataa 242  Q
    |||||||| || |||||||| ||||| || ||||| ||||||||||| || |  ||||| || |||||||| | ||| | || |||||| |  |||||||    
T  39541372 cctttcctatcaggacatttaaaaccgattgattcgaaaaattcaagcacgtgctcacggggaccttggtatataatgtgactatcagagagtagaataa 39541471  T
Q  243 tgtcatcaaaaag 255  Q
    | |||||||||||    
T  39541472 tttcatcaaaaag 39541484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 269
Target Start/End: Original strand, 39577264 - 39577356
Alignment:
Q  177 caaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctg 269  Q
    ||||||||||||| || | ||||| ||| || ||||| ||||| |  || ||||| |  ||||||||||| |||||||| |||||||||||||    
T  39577264 caaaaaattcaagcacgtgttcacaaggaccctggtacacaatgtgcccctcagagagtagaataatgtcgtcaaaaagatcataagtctctg 39577356  T

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