View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18576_low_11 (Length: 280)
Name: NF18576_low_11
Description: NF18576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18576_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 29372943 - 29372694
Alignment:
| Q |
19 |
aaataaacacataacctctcttcaatttattcactttcgctccatcccgccaacactccaagtggatgaacaaattattcggggcaataaaattcaattc |
118 |
Q |
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| T |
29372943 |
aaataaacacataacctatcttcaatttattcactctcgctccatcccgccaacactccaagtggatgaacaaattattcgaggcaataaaattcaattc |
29372844 |
T |
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| Q |
119 |
aagccataaaccaatattattacttgaacaatttgatatacttgccaagtgtccctcaagctgcaagcgcgctattatatcttgtaataaaatattgttc |
218 |
Q |
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| T |
29372843 |
aagccataaaccaatattattacttgaacaatttgatatacttgccaagtgtccctcaagctgcaagcgcgctattatatcttgtaataaaatattgttc |
29372744 |
T |
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| Q |
219 |
ctacgagaactttgtcatgaataccaatgacctctttttaatatgatgat |
268 |
Q |
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| T |
29372743 |
ctacgagaactttgtcacgaataccaatgacctctttttaatatgatgat |
29372694 |
T |
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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 45087928 - 45088011
Alignment:
| Q |
182 |
caagcgcgctattatatcttgtaataaaatattgttcctacgagaactttgtcatgaataccaatgacctctttttaatatgat |
265 |
Q |
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||||||| ||||||||||| ||||||||| || ||||||||||||||||||| |||||||| |||| |||||||||||||||| |
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| T |
45087928 |
caagcgcactattatatctcgtaataaaacatcgttcctacgagaactttgttatgaatactgatgaactctttttaatatgat |
45088011 |
T |
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