View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18576_low_14 (Length: 264)
Name: NF18576_low_14
Description: NF18576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18576_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 2874758 - 2874990
Alignment:
| Q |
13 |
gagatgaaccatataggtttgtaacagttactcaatttgcagaggcattcaagtcgttccatgttgggaagacgatcaaagaagagcttgaaattccatt |
112 |
Q |
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| T |
2874758 |
gagatgaaccatataggtttgtaacagttactcaatttgcagaggcattcaagtcgttccatgttgggaagacgatcaaagaagagcttgaaattccatt |
2874857 |
T |
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| Q |
113 |
tgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgctt |
212 |
Q |
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| T |
2874858 |
tgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgctt |
2874957 |
T |
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| Q |
213 |
atgaaaagaaattcattcatttacctctttaag |
245 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2874958 |
atgaaaagaaattcattcatttacctctttaag |
2874990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 2884632 - 2884839
Alignment:
| Q |
19 |
aaccatataggtttgtaacagttactcaatttgcagaggcattcaagtcgttccatgttgggaagacgatcaaagaagagcttgaaattccatttgacaa |
118 |
Q |
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| T |
2884632 |
aaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaa |
2884731 |
T |
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| Q |
119 |
gtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgcttatgaaa |
218 |
Q |
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| T |
2884732 |
gtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagagtatttgcttatgaaa |
2884831 |
T |
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| Q |
219 |
agaaattc |
226 |
Q |
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|||||||| |
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| T |
2884832 |
agaaattc |
2884839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 2899928 - 2899721
Alignment:
| Q |
19 |
aaccatataggtttgtaacagttactcaatttgcagaggcattcaagtcgttccatgttgggaagacgatcaaagaagagcttgaaattccatttgacaa |
118 |
Q |
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||||||| |||||| |||| |||||||||||||| |||||||| | || | ||||||||| | || | | ||| ||||||| ||||||||||||||| |
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| T |
2899928 |
aaccatacaggtttttaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaagagatgagcttgcaattccatttgacaa |
2899829 |
T |
|
| Q |
119 |
gtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttttgcttatgaaa |
218 |
Q |
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||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||||||||| | ||||||||||||| |
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| T |
2899828 |
gtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaa |
2899729 |
T |
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| Q |
219 |
agaaattc |
226 |
Q |
| |
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| T |
2899728 |
aggaattc |
2899721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 44236023 - 44235905
Alignment:
| Q |
108 |
ccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttt |
207 |
Q |
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|||||||||||| | || | |||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||| |||||||||||| || |
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| T |
44236023 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
44235924 |
T |
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| Q |
208 |
tgcttatgaaaagaaattc |
226 |
Q |
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|||| |||||||||||||| |
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| T |
44235923 |
tgctcatgaaaagaaattc |
44235905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 44213048 - 44212930
Alignment:
| Q |
108 |
ccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttt |
207 |
Q |
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|||||||||||| | || | |||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||| |||||||||||| || |
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| T |
44213048 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
44212949 |
T |
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| Q |
208 |
tgcttatgaaaagaaattc |
226 |
Q |
| |
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|||| |||||||| ||||| |
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| T |
44212948 |
tgctcatgaaaaggaattc |
44212930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 44225209 - 44225091
Alignment:
| Q |
108 |
ccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttt |
207 |
Q |
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|||||||||||| | || | |||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||| |||||||||||| || |
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| T |
44225209 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
44225110 |
T |
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| Q |
208 |
tgcttatgaaaagaaattc |
226 |
Q |
| |
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|||| |||||||| ||||| |
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| T |
44225109 |
tgctcatgaaaaggaattc |
44225091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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