View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18576_low_15 (Length: 250)
Name: NF18576_low_15
Description: NF18576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18576_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28570530 - 28570756
Alignment:
| Q |
1 |
aaacagatgaagataagtgcaagtagttagatttacctaaaatagagatcatgttgagtctctaaagcataaacggtaagccataatagagttattattg |
100 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28570530 |
aaacagatgaagataagtgcaagtagtcag-tttacctaaaatagagatcatgttgagtctctaaagcataaactgtaagccataatagagttattattg |
28570628 |
T |
|
| Q |
101 |
aaattggctgcgtcaacattgcatttgatgtggtcgggttgcggcttggtccacgtcgattgttgatgttacggcttgcccgcttagctcgttgcatgca |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||| |
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| T |
28570629 |
aaattggatgcgtcaacattgcatttgatgtggtcgggttgcggcttggtccacatcgattgctgatcttagggcttgcccgcttagctcgttgcatgca |
28570728 |
T |
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| Q |
201 |
gctccattcgtgtagcacatcatgagca |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
28570729 |
gctccattcgtgtagcacatcatgagca |
28570756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 54657660 - 54657433
Alignment:
| Q |
9 |
gaagataagtgcaagtagttagatttacctaa-aatagagatcatgttgagtctctaaagcataaacggtaagccataatagagttattattgaaattgg |
107 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
54657660 |
gaagataagtgcaagtagttagatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattgg |
54657561 |
T |
|
| Q |
108 |
ctgcgtcaacattgcatttgatgtggtcgggttgcggcttggtccacgtcgattgttgatgtt-acggcttgcc---cgcttagctcgttgcatgcagct |
203 |
Q |
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| T |
54657560 |
tcgtgtcaacattgcatttgatgtggccggcctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagct |
54657461 |
T |
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| Q |
204 |
ccattcgtgtagcacatcatgagcacaa |
231 |
Q |
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| T |
54657460 |
ccattcgtgtagcacatcataagcacaa |
54657433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 43733720 - 43733490
Alignment:
| Q |
3 |
acagatgaagataagtgcaagtagttagatttacctaa-aatagagatcatgttgagtctctaaagcataaacggtaagccataatagagttattattga |
101 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |||||| ||||| |||||||||||| |
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| T |
43733720 |
acagatgaagataagttcaagtagtcggatttacctaataatagagatcacgttgagtctctaaagcataaatcgtaagcagtaataaagttattattga |
43733621 |
T |
|
| Q |
102 |
aattggctgcgtcaacattgcatttgatgtggtcgggttgcggcttggtccacgtcgattgttgatgtt-acggcttgcccg---cttagctcgttgcat |
197 |
Q |
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||||| | | |||||||||||||||||| |||||||| |||||||||||||||||| |||| |||| || ||||||| | ||||||||||| ||| |
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| T |
43733620 |
aattgaccgtgtcaacattgcatttgatatggtcgggctgcggcttggtccacgtcaattgatgatcttgggggcttgcatgatacttagctcgttacat |
43733521 |
T |
|
| Q |
198 |
gcagctccattcgtgtagcacatcatgagca |
228 |
Q |
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||||||||||||||| |||||||||| |||| |
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| T |
43733520 |
gcagctccattcgtggagcacatcataagca |
43733490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 29928707 - 29928811
Alignment:
| Q |
5 |
agatgaagataagtgcaagtagttagatttacctaa-aatagagatcatgttgagtctctaaagcataaacggtaagccataatagagttattattgaaa |
103 |
Q |
| |
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|||| |||||||||||||||||| | ||||| | || || |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
29928707 |
agataaagataagtgcaagtagtcacatttatcaaataacagagatcatgttgagtctctaaagcataaattgtaagccataataaagttattattgaaa |
29928806 |
T |
|
| Q |
104 |
ttggc |
108 |
Q |
| |
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||||| |
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| T |
29928807 |
ttggc |
29928811 |
T |
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