View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18576_low_2 (Length: 565)
Name: NF18576_low_2
Description: NF18576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18576_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 296 - 550
Target Start/End: Complemental strand, 27845465 - 27845211
Alignment:
| Q |
296 |
aattacagtcaaagtaagtatttgcaaatggctagttaacaaaggttaaaataaagctatatcccttgattccnnnnnnnn-caagcaaaagttttgatg |
394 |
Q |
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| T |
27845465 |
aattacagtcaa-gtaagtatttgcaaatggctagttaacaaaggttaaaataaagctatatcccttgattccaaaaaaaaacaagcaaaagttttgatg |
27845367 |
T |
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| Q |
395 |
cttattttgtctgcaaaacaaaagtgtgtataagtaactgtctcttttgtccctcttggtagacttatgtacaaatataacaggtactaacttattccct |
494 |
Q |
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| T |
27845366 |
cttattttgtctgcaaaacaaaagtgtgtataagtaactgtctcttttgtccctcttggtagacatatgtacaaatataacaggtactaacttattcccg |
27845267 |
T |
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| Q |
495 |
accctagctatatagctctcataagcatttaacctccctatttcctacttgtattt |
550 |
Q |
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| T |
27845266 |
accctagctatatagctctcataagcatttaacctccctatttcctacctgtattt |
27845211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 133 - 281
Target Start/End: Complemental strand, 27845721 - 27845558
Alignment:
| Q |
133 |
gtgtaatgaaaatgttgttagcataaggtcaatttcaaaattgatatgttttaagtctgatcta----------------ataaaaatgttgttaggatg |
216 |
Q |
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| T |
27845721 |
gtgtaatgaaaatgttgttagcataaggtcaatttcaaaatatatatgttt-aagtctgatctattatccgtcgtttgtaataaaaatgttgttaggatg |
27845623 |
T |
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| Q |
217 |
gttcttccagccatatatgatatatactttgttactcaatgctagtataattcatccttataaaa |
281 |
Q |
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| T |
27845622 |
gatcttccagccatatatgatatatactttgttactcaatgctagtataattcatccttataaaa |
27845558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 27845786 - 27845706
Alignment:
| Q |
39 |
acatggtctttaatcggttaaaatagaaatgaatctcactgaattaggctacacataaatagcatgtgtaatgaaaatgtt |
119 |
Q |
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| T |
27845786 |
acatggtctttaatcggttaaaatagaaatgaatctcactgaattaggctacacataaatagcatgtgtaatgaaaatgtt |
27845706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 296 - 444
Target Start/End: Complemental strand, 20140343 - 20140192
Alignment:
| Q |
296 |
aattacagtcaaagtaagtatttgcaaatggctagttaacaaaggttaaaataaagctatatcccttgatt---ccnnnnnnnncaagcaaaagttttga |
392 |
Q |
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| T |
20140343 |
aattacagtcaaagtaagtatttgcaaatggctagttaacaatggttaaaataaagctatatcccttgattaaaaaaaaaacaacaagcaaaagttttga |
20140244 |
T |
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| Q |
393 |
tgcttattttgtctgcaaaacaaaagtgtgtataagtaactgtctcttttgt |
444 |
Q |
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| T |
20140243 |
tgcttattttgtctgcaaaacaaaactgtgtgtaagtaactgtctcttttgt |
20140192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 296 - 444
Target Start/End: Original strand, 22192526 - 22192677
Alignment:
| Q |
296 |
aattacagtcaaagtaagtatttgcaaatggctagttaacaaaggttaaaataaagctatatcccttgatt---ccnnnnnnnncaagcaaaagttttga |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22192526 |
aattacagtcaaagtaagtatttgcaaatggctagttaacaatggttaaaataaagctatatcccttgattaaaaaaaaaacaacaagcaaaagttttga |
22192625 |
T |
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| Q |
393 |
tgcttattttgtctgcaaaacaaaagtgtgtataagtaactgtctcttttgt |
444 |
Q |
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| T |
22192626 |
tgcttattttgtctgcaaaacaaaactgtgtgtaagtaactgtctcttttgt |
22192677 |
T |
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