View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18576_low_21 (Length: 230)
Name: NF18576_low_21
Description: NF18576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18576_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 47268852 - 47269075
Alignment:
| Q |
1 |
caattctactacacacatacaagtcatgaatatcgatacaaacaaatctaaaccatctcatttcagctgctagctgagaaaatgcaaatgcatttcctag |
100 |
Q |
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| T |
47268852 |
caattctactacacacatacaagtcatgaatatcgatacaaacaaatctaaaccatctcatttcagctgctagctgagaaaatgcaaatgcatttcctag |
47268951 |
T |
|
| Q |
101 |
aaaacatgtacataga---caccatatatcatgtttgaagttgaccatgattagttattaagatatttgacggactaaattgagaaaaatactgctcaaa |
197 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47268952 |
aaaacatgtacatagacaccaccatatatcatgtttgaagttgaccatgattagttattaagatatttgacggactaaattgagaaaaatactgctcaaa |
47269051 |
T |
|
| Q |
198 |
cagatgcccttctcttgtctctgc |
221 |
Q |
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|||||||||||||||||||||||| |
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| T |
47269052 |
cagatgcccttctcttgtctctgc |
47269075 |
T |
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