View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18576_low_3 (Length: 541)
Name: NF18576_low_3
Description: NF18576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18576_low_3 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 11 - 525
Target Start/End: Complemental strand, 154917 - 154403
Alignment:
| Q |
11 |
caaaggcgatattcttgtagaaaaagtagcatatctgtcgaagcaataatgaagaaattaataacaaaatcaaacaagtaatatatagaatgttgaaatc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
154917 |
caaaggcgatattcttgtagaaaaagtagcatatctgtcgaagcaataatgaagaaattaataacaaaatcaaacaagtaatatatagaatgttgaaatc |
154818 |
T |
|
| Q |
111 |
caacaaagagtagcaatgtaccattgatgtgatcctccggtaacaccaatgtccatgtacaagaagtaacctttccaaataacggaactgtgcgattgca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
154817 |
caacaaagagtagcaatgtaccattgatgtgatcctccggtaacaccaatgtccatgtacaagaagtaacctttccaaataacggaactgtgcgattgca |
154718 |
T |
|
| Q |
211 |
atatcactagacataacagcctagaggtgaatgagtaacaaaaaggttgttacaaaataatacgatgaagcaaaaccaaataaacgaacacaacaaaact |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
154717 |
atatcactagacataacagcctagaggtgaatgagtaacaaaaaggttgttacaaaataatacgatgaagcaaaaccaaataaacgaacacaacaaaact |
154618 |
T |
|
| Q |
311 |
agtttatacctgcattccttcaacgccactgattccaacccctatatctgcttcttgaagcattccaacatcattagctccatcaccaatagctaatgta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
154617 |
agtttatacctgcattccttcaacgccactgattccaacccctatatctgcttcttgaagcattccaacatcattagctccatcaccaatagctaatgta |
154518 |
T |
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| Q |
411 |
gttttaccagttccagatttgaccagtctagtaacctttaagggaagaaacaatgaagagtattatttaaaatctaaacagaattaaattactattagaa |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
154517 |
gttttaccagttccagatttgaccagtctagtaacctttaagggaagaaacaatgaagagtattatttaaaatctaaacagaattaaattactattagaa |
154418 |
T |
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| Q |
511 |
acaaaacaaaaagat |
525 |
Q |
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||||||||||||||| |
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| T |
154417 |
acaaaacaaaaagat |
154403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 317 - 449
Target Start/End: Complemental strand, 13709503 - 13709371
Alignment:
| Q |
317 |
tacctgcattccttcaacgccactgattccaacccctatatctgcttcttgaagcattccaacatcattagctccatcaccaatagctaatgtagtttta |
416 |
Q |
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|||||||||||||||||| ||||||||||||| |||| ||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||| |
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| T |
13709503 |
tacctgcattccttcaacaccactgattccaatacctacatcagcttcttgaagcattcccacgtcattagctccatcaccgatagctaatgttgtttta |
13709404 |
T |
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| Q |
417 |
ccagttccagatttgaccagtctagtaaccttt |
449 |
Q |
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| T |
13709403 |
ccagttccttctttgaccaatctagtaaccttt |
13709371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 13709699 - 13709607
Alignment:
| Q |
142 |
atcctccggtaacaccaatgtccatgtacaagaagtaacctttccaaataacggaactgtgcgattgcaatatcactagacataacagcctag |
234 |
Q |
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| T |
13709699 |
atcctcctgtagcaccaatgtccatgtacaagaagtaatctttccagataccggaattgtgcaattgcaatatcactagccatgacggcctag |
13709607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 318 - 452
Target Start/End: Original strand, 29587539 - 29587673
Alignment:
| Q |
318 |
acctgcattccttcaacgccactgattccaacccctatatctgcttcttgaagcattccaacatcattagctccatcaccaatagctaatgtagttttac |
417 |
Q |
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||||||||||||||||| ||||| || ||||| || ||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| | |
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| T |
29587539 |
acctgcattccttcaacaccacttataccaactccgatatcagcttcttgaagcattccaacatcgttagctccatcgccgatagctaatgttgttttcc |
29587638 |
T |
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| Q |
418 |
cagttccagatttgaccagtctagtaacctttaag |
452 |
Q |
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| T |
29587639 |
cggttccagatttgaccaatctagtgacctttaag |
29587673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 29587338 - 29587441
Alignment:
| Q |
129 |
taccattgatgtgatcctccggtaacaccaatgtccatgtacaagaagtaacctttccaaataacggaactgtgcgattgcaatatcactagacataaca |
228 |
Q |
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|||||| |||| ||||||||||||||||||||| || || || |||||||| | ||||||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
29587338 |
taccatcgatgagatcctccggtaacaccaatggccgtgcaccagaagtaatcgttccaaatatcggaattgtgcaattgcaatatcactagacataaca |
29587437 |
T |
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| Q |
229 |
gcct |
232 |
Q |
| |
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|||| |
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| T |
29587438 |
gcct |
29587441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 397
Target Start/End: Complemental strand, 6209267 - 6209188
Alignment:
| Q |
318 |
acctgcattccttcaacgccactgattccaacccctatatctgcttcttgaagcattccaacatcattagctccatcacc |
397 |
Q |
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|||||||| |||||||| || ||||||||||| || |||||||||||||| | ||| ||||||||||| || |||||||| |
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| T |
6209267 |
acctgcataccttcaaccccgctgattccaacaccaatatctgcttcttgtatcatgccaacatcatttgcaccatcacc |
6209188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 318 - 424
Target Start/End: Original strand, 42747888 - 42747994
Alignment:
| Q |
318 |
acctgcattccttcaacgccactgattccaacccctatatctgcttcttgaagcattccaacatcattagctccatcaccaatagctaatgtagttttac |
417 |
Q |
| |
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|||||||| |||||||| || ||||||||||| || || || |||||||||| ||| ||||||||||| || |||||||| || ||||| || || || | |
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| T |
42747888 |
acctgcataccttcaaccccgctgattccaacaccaatgtcagcttcttgaatcatgccaacatcatttgcaccatcacctattgctaaagtggtcttcc |
42747987 |
T |
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| Q |
418 |
cagttcc |
424 |
Q |
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| T |
42747988 |
cagttcc |
42747994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 415
Target Start/End: Complemental strand, 1279606 - 1279509
Alignment:
| Q |
318 |
acctgcattccttcaacgccactgattccaacccctatatctgcttcttgaagcattccaacatcattagctccatcaccaatagctaatgtagtttt |
415 |
Q |
| |
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|||||||| |||||| | ||||| |||||||| || ||||| ||||| |||||||| ||||| ||||| || ||||||||||||| ||| || ||||| |
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| T |
1279606 |
acctgcatcccttcagcaccactaattccaactccaatatcagcttcctgaagcataccaacgtcatttgcaccatcaccaatagataaagttgtttt |
1279509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 46050501 - 46050604
Alignment:
| Q |
129 |
taccattgatgtgatcctccggtaacaccaatgtccatgtacaagaagtaacctttccaaataacggaactgtgcgattgcaatatcactagacataaca |
228 |
Q |
| |
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||||||||||| |||||| | |||||||||||||||||| ||||||||||| | ||| | ||| | ||||| || || || |||||||| |||||||| |
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| T |
46050501 |
taccattgatgagatccttctgtaacaccaatgtccatgcacaagaagtaagcgttcgagatatctaaactgagcaatggcgatatcacttgacataact |
46050600 |
T |
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| Q |
229 |
gcct |
232 |
Q |
| |
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|||| |
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| T |
46050601 |
gcct |
46050604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 405
Target Start/End: Original strand, 46050602 - 46050688
Alignment:
| Q |
319 |
cctgcattccttcaacgccactgattccaacccctatatctgcttcttgaagcattccaacatcattagctccatcaccaatagcta |
405 |
Q |
| |
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||||||||||||| || |||||||| || | || ||||| |||||||| ||||| ||||||||||| || ||||| |||||||||| |
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| T |
46050602 |
cctgcattccttccacaccactgataccgattccaatatcagcttcttggagcataccaacatcatttgcaccatctccaatagcta |
46050688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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