View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18576_low_5 (Length: 476)
Name: NF18576_low_5
Description: NF18576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18576_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Complemental strand, 4027836 - 4027393
Alignment:
| Q |
20 |
ctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgttttccagagcttctcaaataatttatgctgtaatgtctgctt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4027836 |
ctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgttttccagagcttctcaaataatttatgctgtaatgtctgctt |
4027737 |
T |
|
| Q |
120 |
attaaattcgaatttgtgttacgaattgatcctgaaactttaagatttttcaatgaaacagtatgtaatcatggttttttacttcttagctctatatttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4027736 |
attaaattcgaatttgtgttacgaattgatcctgaaactttaagatttttcaatgaaacagtatgtaatcatggttttttacttcttagctctatatttg |
4027637 |
T |
|
| Q |
220 |
tagatattgtatgagctgtgaagtaagaccaaaacctttttgtgaccttccttatattctatgtcctgcacacttatgtagaaatcattgtataatagaa |
319 |
Q |
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| T |
4027636 |
tagatattgtatgagctgtgaagtaagaccaaaacctttttgtgaccttccttatattctatgtcctgcacacttatgtagaaatcattgtataatagaa |
4027537 |
T |
|
| Q |
320 |
ctaaatgttaatttgcagatattagagcaaactatcattttggtccttaatgtcaagaattgggacttgaaaaatttctcatgtgtaggtcagagggact |
419 |
Q |
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| T |
4027536 |
ctaaatattaatttgcagatattagagcaaactatcattttggtccttaatgtcaagaattgggacttgaaaaatttctcatgtgtaggtcagagggact |
4027437 |
T |
|
| Q |
420 |
atgactaataagcttttatgagttttaacaacttagaattgcct |
463 |
Q |
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| T |
4027436 |
atgactaataagcttttatgagttttaacaacttagaattgcct |
4027393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 463
Target Start/End: Original strand, 3951049 - 3951483
Alignment:
| Q |
30 |
agaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgttttccagagcttctcaaataatttatgctgtaatg--tctgcttattaaatt |
127 |
Q |
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|||||||| |||| |||||| |||||||||| ||||||| |||||| ||| |||| ||||||| ||| |||||||||| ||||||||| || || |
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| T |
3951049 |
agaaagattgttcgtagtgcacttgttccaatccaatggcatatttgccttctggagcctctcaaacaatatatgctgtaaatactctgcttatcaattt |
3951148 |
T |
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| Q |
128 |
cgaatttgtg-ttacgaattgatcctgaaactttaagatttttcaatgaaacagtatgtaatcatggttttttacttcttagctctatatttgtagatat |
226 |
Q |
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| T |
3951149 |
caaatttgtggttatgaattaatgctgaaaattttcgatttatcaacgagacagtatgtaattatagttttc--------agttctatatttgtagatat |
3951240 |
T |
|
| Q |
227 |
tgtatgagctgtgaagtaagaccaaaacctttttgtgaccttcct---tatattctatgtcctgcacactt--atgtagaaatcattgtataatagaact |
321 |
Q |
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| T |
3951241 |
tgttagagctttaaagtaagacaaaaacttttttgtgaccttcttccatatatataatgtcctgcacacttttatgcagaaaccgttgtataataatact |
3951340 |
T |
|
| Q |
322 |
aaatgttaatt-tgcagatattagagcaaactatcattttggtccttaatgtcaagaattgggacttgaaaaatt--tctcatgtgtaggtcagagggac |
418 |
Q |
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| T |
3951341 |
aaaaatttactctgcagaaattagagtaaact--cattttgttccttaaagtcaagaattgggacttgaaaacttcgtcacacgtgtagctcggagggat |
3951438 |
T |
|
| Q |
419 |
tatgactaataagcttttatgagttttaacaacttagaattgcct |
463 |
Q |
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| | || | ||| ||||||||||||||||||||||||| |||||| |
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| T |
3951439 |
tttaaccagtaaacttttatgagttttaacaacttagagttgcct |
3951483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 4013616 - 4013500
Alignment:
| Q |
20 |
ctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgttttccagagcttctcaaataatttatgctgtaatgtctgctt |
119 |
Q |
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|||||||||||||||||| |||| | ||| | |||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||||| |
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| T |
4013616 |
ctagagacgaagaaagattgttccgtgtgaaattgttccaattcaatggcgtatttgtcttccggagcttctcaaataatatatgctgtaatctctgctt |
4013517 |
T |
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| Q |
120 |
attaaattcgaatttgt |
136 |
Q |
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||| | ||||||||||| |
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| T |
4013516 |
attgatttcgaatttgt |
4013500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 4005370 - 4005213
Alignment:
| Q |
20 |
ctagagacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgttttccagagcttctcaaataatttatgctgtaat--gtctgc |
117 |
Q |
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|||||||||||||||||| |||||||||||| |||||||| ||||||||| ||||| | ||| || |||||||| |||| ||||||||||| |||| |
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| T |
4005370 |
ctagagacgaagaaagattgttcagagtgcacttgttccagttcaatggcatatttatcttctggaacttctcaactaatatatgctgtaattgctctgt |
4005271 |
T |
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| Q |
118 |
ttattaaattcgaatttgtgttacgaattgatcct--gaaactttaagatttttcaat |
173 |
Q |
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||||||||||||||||||||||| ||||| || || ||||||||||||||| ||||| |
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| T |
4005270 |
ttattaaattcgaatttgtgttatgaattaatgctgagaaactttaagatttatcaat |
4005213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 3991305 - 3991155
Alignment:
| Q |
24 |
agacgaagaaagatcgttcagagtgcatttgttccaattcaatggcgtatttgttttccagagcttctcaaataatttatgctgtaatgtctgcttatta |
123 |
Q |
| |
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|||||||||||||| |||||||||| | ||||||||||||||||||| |||||| |||| ||||||| |||||| ||||||||||| |||||||||| |
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| T |
3991305 |
agacgaagaaagattgttcagagtgaagttgttccaattcaatggcgcatttgtcttccggagcttcatcaataatatatgctgtaatctctgcttattg |
3991206 |
T |
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| Q |
124 |
aattcgaatttgtgttacgaattgatcctgaaactttaagatttttcaatg |
174 |
Q |
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| T |
3991205 |
attttgaatttccgttacaaattaatgctaaaactttaagatttatcaatg |
3991155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 375 - 463
Target Start/End: Complemental strand, 4013184 - 4013094
Alignment:
| Q |
375 |
agaattgggacttgaaaaatttctca--tgtgtaggtcagagggactatgactaataagcttttatgagttttaacaacttagaattgcct |
463 |
Q |
| |
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||||||||||||||||||| | |||| ||||||| | ||| || ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4013184 |
agaattgggacttgaaaaaatgctcacatgtgtagctttgagagattatgactaataagcttttatgagttttaatgacttagaattgcct |
4013094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 4013364 - 4013305
Alignment:
| Q |
210 |
tctatatttgtagatattgtatgagctgtgaagtaagaccaaaacctttttgtgaccttc |
269 |
Q |
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| T |
4013364 |
tctatatttgtagatattgtatgagctgtagagtaagaccaaaacatttttgttaccttc |
4013305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 3990654 - 3990563
Alignment:
| Q |
226 |
ttgtatgagctgtgaagtaagaccaaaacctttttgtgaccttccttatattctatgtcctgcacac--ttatgta-gaaatcattgtataatag |
317 |
Q |
| |
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||||||||||| ||||| ||||||||||| ||||||||| || ||||||||| |||| ||||||| ||||| | |||||||||||||||||| |
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| T |
3990654 |
ttgtatgagctttgaagaaagaccaaaacttttttgtgaact---ttatattctctgtcttgcacacttttatgcaggaaatcattgtataatag |
3990563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 461
Target Start/End: Complemental strand, 3990312 - 3990265
Alignment:
| Q |
413 |
agggactatgactaataagcttttatgagttttaacaacttagaattgc |
461 |
Q |
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||||| |||||||||||| ||||||||||| ||||| |||||||||||| |
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| T |
3990312 |
agggattatgactaataaacttttatgagtcttaac-acttagaattgc |
3990265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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