View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18576_low_6 (Length: 444)

Name: NF18576_low_6
Description: NF18576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18576_low_6
NF18576_low_6
[»] chr5 (5 HSPs)
chr5 (19-272)||(15803334-15803588)
chr5 (357-427)||(15803673-15803743)
chr5 (101-165)||(20839134-20839198)
chr5 (101-165)||(20812779-20812843)
chr5 (102-142)||(30418272-30418312)
[»] chr8 (11 HSPs)
chr8 (20-272)||(3364593-3364835)
chr8 (19-149)||(3315281-3315411)
chr8 (19-149)||(3391184-3391314)
chr8 (368-432)||(3390854-3390918)
chr8 (47-143)||(7164315-7164411)
chr8 (101-165)||(31176349-31176413)
chr8 (384-423)||(3364918-3364957)
chr8 (19-74)||(13787647-13787702)
chr8 (386-428)||(3315680-3315722)
chr8 (36-154)||(3406981-3407099)
chr8 (19-136)||(3429625-3429746)
[»] chr3 (2 HSPs)
chr3 (21-158)||(6905469-6905606)
chr3 (79-135)||(32410757-32410813)
[»] scaffold0468 (1 HSPs)
scaffold0468 (31-129)||(5838-5936)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 15803334 - 15803588
Alignment:
Q  19 ggaacatcacaggcattacaaatttcggatctttccatgagatcccttttgtttggtatcggaagttgtcacattgtcatcaatactcttggcaagagct 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15803334 ggaacatcacaggcattacaaatttcggatcttttcatgagatcccttttgtttggtatcggaagttgtcacattgtcatcaatactcttggcaagagct 15803433  T
Q  119 tatcacgggtttcttctccatcctcccacctttactgataattattaatttattacttaggaaaacatagaactactttccatttgca-nnnnnnnnctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  15803434 tatcacgggtttcttctccatcctcccacctttactgataattattaatttattacttaggaaaacatagaactactttccatttgcatttttttttttt 15803533  T
Q  218 caaatggtaaaagattttaaaatatacaaatttattcaagtatcataagagaaaa 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15803534 caaatggtaaaagattttaaaatatacaaatttattcaagtatcataagagaaaa 15803588  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 357 - 427
Target Start/End: Original strand, 15803673 - 15803743
Alignment:
Q  357 agcttattcatatattcgtaacacatgtttaactttgaaaggatatttgaataactattgaagctatacac 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15803673 agcttattcatatattcgtaacacatgtttaactttgaaaggatatttgaataactattgaagctatacac 15803743  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 20839134 - 20839198
Alignment:
Q  101 atactcttggcaagagcttatcacgggtttcttctccatcctcccacctttactgataattatta 165  Q
    |||||||||||||||||||| ||| ||||||||||  |||||  |||||||||||||| ||||||    
T  20839134 atactcttggcaagagcttagcacaggtttcttctttatcctttcacctttactgatatttatta 20839198  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 20812779 - 20812843
Alignment:
Q  101 atactcttggcaagagcttatcacgggtttcttctccatcctcccacctttactgataattatta 165  Q
    |||||||||||||||||||| ||| |||| |||||  |||||  |||||||||||||| ||||||    
T  20812779 atactcttggcaagagcttagcacaggttccttctttatcctttcacctttactgatatttatta 20812843  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 30418272 - 30418312
Alignment:
Q  102 tactcttggcaagagcttatcacgggtttcttctccatcct 142  Q
    ||||||||||||||||||||||| |||| |||||| |||||    
T  30418272 tactcttggcaagagcttatcacaggttccttctctatcct 30418312  T

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Target: chr8 (Bit Score: 148; Significance: 6e-78; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 3364593 - 3364835
Alignment:
Q  20 gaacatcacaggcattacaaatttcggatctttccatgagatcccttttgtttggtatcggaagttgtcacattgtcatcaatactcttggcaagagctt 119  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||    
T  3364593 gaacatcacatgcattacaaatttcgaatcttaccatgagatcccttttgtttggtatcggaagttgccacattgtcatcaacactcttcgcaagagctt 3364692  T
Q  120 atcacgggtttcttctccatcctcccacctttactgataattattaatttattacttaggaaaacatagaactactttccatttgcannnnnnnncttca 219  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||        |||||    
T  3364693 atcacaggtttcttctctatcctcccacctttactgataattattaatttattactta---------agaactactttccatttgca-tttttgtcttca 3364782  T
Q  220 aatggtaaaagattttaaaatatacaaatttattcaagtatcataagagaaaa 272  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  3364783 aatggtaaaagattcttaaatatacaaatttattcaggtatcataagagaaaa 3364835  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 3315281 - 3315411
Alignment:
Q  19 ggaacatcacaggcattacaaatttcggatctttccatgagatcccttttgtttggtatcggaagttgtcacattgtcatcaatactcttggcaagagct 118  Q
    ||||||||||| | || |||||||| |||||||||| ||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| | |||||||    
T  3315281 ggaacatcacatggatcacaaattttggatctttccttgagatctcttttgtttggaatcggaagttgccacatagtcatcaatactcttcggaagagct 3315380  T
Q  119 tatcacgggtttcttctccatcctcccacct 149  Q
    |||||  |||| |||||  |||||| |||||    
T  3315381 tatcagaggttccttctatatcctctcacct 3315411  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 3391314 - 3391184
Alignment:
Q  19 ggaacatcacaggcattacaaatttcggatctttccatgagatcccttttgtttggtatcggaagttgtcacattgtcatcaatactcttggcaagagct 118  Q
    |||| |||||| |||| ||| |||||||||| |||| ||||||| |||||| |||| || |||| ||| ||||| |||||||||| |||||| |||||||    
T  3391314 ggaatatcacatgcatcacacatttcggatcattccttgagatctcttttgattggaatgggaaattgccacatagtcatcaatattcttgggaagagct 3391215  T
Q  119 tatcacgggtttcttctccatcctcccacct 149  Q
    |||||| |||| |||||| ||| || |||||    
T  3391214 tatcacaggttccttctcaatcttctcacct 3391184  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 368 - 432
Target Start/End: Complemental strand, 3390918 - 3390854
Alignment:
Q  368 atattcgtaacacatgtttaactttgaaaggatatttgaataactattgaagctatacacaggtt 432  Q
    |||||| ||||| |||| ||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  3390918 atattcataacaaatgtgtaactttaaaaggatagttgaataactattgaagttatacacaggtt 3390854  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 143
Target Start/End: Complemental strand, 7164411 - 7164315
Alignment:
Q  47 atctttccatgagatcccttttgtttggtatcggaagttgtcacattgtcatcaatactcttggcaagagcttatcacgggtttcttctccatcctc 143  Q
    |||||||| ||||||| |||||| |||| || ||||||||||||||  ||||  |||||| |||||||||| |||| | ||||  ||||| ||||||    
T  7164411 atctttccttgagatcacttttgattggaatgggaagttgtcacataatcattgatactcgtggcaagagcatatcccaggttctttctctatcctc 7164315  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 31176349 - 31176413
Alignment:
Q  101 atactcttggcaagagcttatcacgggtttcttctccatcctcccacctttactgataattatta 165  Q
    ||||||||| |||||||||| ||| |||| ||||||||||||  ||||||||| |||| ||||||    
T  31176349 atactcttgacaagagcttagcacaggttccttctccatcctttcacctttacagatatttatta 31176413  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 423
Target Start/End: Original strand, 3364918 - 3364957
Alignment:
Q  384 tttaactttgaaaggatatttgaataactattgaagctat 423  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  3364918 tttaacttcgaaaggatatttgaataactattgtagctat 3364957  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 13787647 - 13787702
Alignment:
Q  19 ggaacatcacaggcattacaaatttcggatctttccatgagatcccttttgtttgg 74  Q
    |||||||| || |||| ||||||||||||||||||| ||||||| |||||| ||||    
T  13787647 ggaacatcgcatgcatcacaaatttcggatctttccttgagatcacttttgattgg 13787702  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 428
Target Start/End: Original strand, 3315680 - 3315722
Alignment:
Q  386 taactttgaaaggatatttgaataactattgaagctatacaca 428  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||    
T  3315680 taactttaaaaggatagttgaataactattgaagttatacaca 3315722  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 154
Target Start/End: Complemental strand, 3407099 - 3406981
Alignment:
Q  36 acaaatttcggatctttccatgagatcccttttgtttggtatcggaagttgtcacattgtcatcaatactcttggcaagagcttatcacgggtttcttct 135  Q
    |||||| || ||||||||| ||  ||| |||||| |||| || |||||||  ||||  |||| | | |||||||||||||||||||| | ||||  || |    
T  3407099 acaaatctcagatctttccttgcaatctcttttgattggaatgggaagttaccacaaagtcaacgagactcttggcaagagcttatcgcaggttatttat 3407000  T
Q  136 ccatcctcccacctttact 154  Q
    ||||||| |||||||||||    
T  3406999 ccatccttccacctttact 3406981  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 3429625 - 3429746
Alignment:
Q  19 ggaacatcacaggcattacaaatttcggatctttccatgagatcccttttgtttggtatcggaagttgtcacatt----gtcatcaatactcttggcaag 114  Q
    ||||||||||| |||| | |||| ||| |||||| | ||||||| ||| || |||| || |||||||| |||||     |||||  ||||||||||||||    
T  3429625 ggaacatcacatgcatcagaaatgtcgaatcttttcttgagatctcttatgattggaatgggaagttgccacatatatagtcattgatactcttggcaag 3429724  T
Q  115 agcttatcacgggtttcttctc 136  Q
    || ||||||| |||| ||||||    
T  3429725 agtttatcacaggttccttctc 3429746  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 6905606 - 6905469
Alignment:
Q  21 aacatcacaggcattacaaatttcggatctttccatgagatcccttttgtttggtatcggaagttgtcacattgtcatcaatactcttggcaagagctta 120  Q
    ||||||||| |||| | |||| |||||| ||||| ||| ||| |||||| ||   || |||||||| ||||| ||| || ||||||||||||||||||||    
T  6905606 aacatcacatgcatcaaaaatctcggatatttccttgaaatctcttttgattacaatgggaagttgccacatagtcgtcgatactcttggcaagagctta 6905507  T
Q  121 tcacgggtttcttctccatcctcccacctttactgata 158  Q
    |||| |||| ||  || |||||| ||||||||||||||    
T  6905506 tcacaggttcctcttctatcctctcacctttactgata 6905469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 32410813 - 32410757
Alignment:
Q  79 ggaagttgtcacattgtcatcaatactcttggcaagagcttatcacgggtttcttct 135  Q
    |||||||| ||||| || ||  ||||||||||||||||| |||||| ||||||||||    
T  32410813 ggaagttgccacatagttattgatactcttggcaagagcatatcacaggtttcttct 32410757  T

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Target: scaffold0468 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 5936 - 5838
Alignment:
Q  31 gcattacaaatttcggatctttccatgagatcccttttgtttggtatcggaagttgtcacattgtcatcaatactcttggcaagagcttatcacgggtt 129  Q
    |||| |||||| |||||||||||| ||| ||| |||||| ||   || |||||||| ||||| ||  ||||| |||||||||| |||||||||| ||||    
T  5936 gcatcacaaatctcggatctttccttgaaatctcttttgattacaatgggaagttgccacatagttgtcaatgctcttggcaatagcttatcacaggtt 5838  T

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