View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18577_high_2 (Length: 359)
Name: NF18577_high_2
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 31516629 - 31516281
Alignment:
| Q |
19 |
cgccaaagtcggaaaattggaaatcaaggttcggattcttgttgatgtttaatttcttagaattgcatgaaaaatacgtgtnnnnnnnttgtcgtttttc |
118 |
Q |
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| T |
31516629 |
cgccaaagtcggaaaattggaaatcaaggttcggattcttgttgatgtttaatttcttagaattgcatgaaaaatacgtgtaaaaaaattgtcgtttttc |
31516530 |
T |
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| Q |
119 |
acgcttaatcaaataactttcattgttgtaatctaagcagttactcactctataatgaaatataagcaaaaattgta-----------tgtcttttttag |
207 |
Q |
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| T |
31516529 |
gcgcttaatcaaataactttcattgttgtaatctaagcagttactcactctataatgaaatataagcaaaaattgtatgtttaactattgtcttttttag |
31516430 |
T |
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| Q |
208 |
taataattgtaatttacgagtatgcatccacatttgtttttccagcattttctttgagttcttagaaatatggactcgaaattagaacaagatgatatac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31516429 |
taataattgtaatttacgagtatgcatccacatttgtttttccagcattttctttgagttcttagaaatatggactcgaaattggaacaagatgatatac |
31516330 |
T |
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| Q |
308 |
ttttaattattattagtaaaagaaagtagaccaagctccacctttatat |
356 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31516329 |
ttttaattattattagtaaaagaaagtagaccacgctccacctttatat |
31516281 |
T |
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