View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18577_high_20 (Length: 239)
Name: NF18577_high_20
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 42339366 - 42339499
Alignment:
| Q |
93 |
catcgataggacaattgcaatgtacaacggtcgtatagcctactaccaacgtgaggtcctaatagaaaagaaatgcttgaaagaccaacaagagacgtta |
192 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42339366 |
catcgataggacaattgcaatgtacaacagtcgtataacctactaccaacgtgaggtcctaatagaaaagaaatgcttggaagaccaacaagagacgtta |
42339465 |
T |
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| Q |
193 |
cttatggctcaatctatatcgaaatgctttgatg |
226 |
Q |
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|||||||||||||||| | |||||||||||||| |
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| T |
42339466 |
cttatggctcaatctaatttgaaatgctttgatg |
42339499 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42339273 - 42339314
Alignment:
| Q |
1 |
tttattatgatgacccaggtgcggtggtgcgataaatatggc |
42 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42339273 |
tttattatgatgacctaggtgcggtggtgcgataaatatggc |
42339314 |
T |
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