View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18577_high_3 (Length: 349)
Name: NF18577_high_3
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 331
Target Start/End: Original strand, 5900467 - 5900781
Alignment:
| Q |
12 |
atcatcacaatatcaaaataataacatattcacacatgattttgttctttttcagtgttatttaaatatcttgtatctttaattgattatatctataaat |
111 |
Q |
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| T |
5900467 |
atcatcacaatatcaaaataataacatattcacacatgattttgttctttttcagtgttatttaaatatcttgtatctttaattgattatatctataaat |
5900566 |
T |
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| Q |
112 |
actacattattgcaagaattaatctgcaatcacaatatcaaccttgaatgacaacacaatagattgcaattctcaacaatatcaaccactcattggatca |
211 |
Q |
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| T |
5900567 |
gctacattattgcaagaattaatctgcaatca-----tcaaccttgaatgacgacacaatagattgcaattctcaacaatatcaaccactcattggatca |
5900661 |
T |
|
| Q |
212 |
caattctccgcaatatcaagaaccataacacgaccacagctacaatctaaaaccctaagtctataacgatgaagcacatacactcctcggattagacgtg |
311 |
Q |
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| T |
5900662 |
caattctccgcaatatcaagaaccacaacacgaccacagctacaatctaaaaccctaagtctataacgatgaagcacatacacacctcggattagacgtg |
5900761 |
T |
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| Q |
312 |
ccccaggttcagacatgtgt |
331 |
Q |
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| T |
5900762 |
tcccaggttcagacatgtgt |
5900781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 28 - 246
Target Start/End: Original strand, 5861636 - 5861854
Alignment:
| Q |
28 |
aataataacatattcacacatgattttgttctttttcagtgttatttaaatatcttgtatctttaattgattatatctataaatactacattattgcaag |
127 |
Q |
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| T |
5861636 |
aataagaacatattcacacatgattttgttctttttcagtgttattaaaatatcttgtatctttaattgattgcatctataaaaactacaatagtgcaag |
5861735 |
T |
|
| Q |
128 |
aattaatctgcaatcacaatatcaaccttgaatgacaacacaatagattgcaattctcaacaatatcaaccactcattggatcacaattctccgcaatat |
227 |
Q |
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| T |
5861736 |
aattaatctgcaatcacaatattagccttgaataacgacacaatcgattgcaattctccacaatatcaaccactcattagagcacaattctccgcaatat |
5861835 |
T |
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| Q |
228 |
caagaaccataacacgacc |
246 |
Q |
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|||||| || | ||||||| |
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| T |
5861836 |
caagaatcaaagcacgacc |
5861854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 308
Target Start/End: Original strand, 27277782 - 27277810
Alignment:
| Q |
280 |
atgaagcacatacactcctcggattagac |
308 |
Q |
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| T |
27277782 |
atgaagcacatacactcctcggattagac |
27277810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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