View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18577_high_8 (Length: 326)
Name: NF18577_high_8
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 11982799 - 11982497
Alignment:
| Q |
19 |
cagaaggcaaaaaacaacactaagtaaaacattcggtacatgaagaaaaatactaagagtaagcgttacttcgatcgacaaggttactgtcggttcgatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11982799 |
cagaaggcaaaaaacaacactaagtaaaacattcggtacatgaagaaaaatactaagagtaagtgttacttcgatcgacaaggttactgtcggttcgatt |
11982700 |
T |
|
| Q |
119 |
aaaagagtgttgtgggattccatatagcacatcatatttgga--atgtgtttttgaagagaccgaaaaatgatgatgagggcgttattggtattacatat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11982699 |
aaaagagtgttgtgggattccatatagcacatcatatttggaatatgtgtttttgaagagaccgaaaaatgatgatgacggcgttattggtattacatat |
11982600 |
T |
|
| Q |
217 |
ggtttcatacaaaatttgtaaagttgtggaagtttcacgctaactcaacacaattttagctagagttcatactaattttgatcttgatgtcacatgatga |
316 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || || || |
|
|
| T |
11982599 |
ggtttcgtacaaaatttgtaaagttgtggaagtttcacgctaactca--acaattttagctagagttcatactaaccttgatcttgatgtcgcaagaaga |
11982502 |
T |
|
| Q |
317 |
tgtcc |
321 |
Q |
| |
|
||||| |
|
|
| T |
11982501 |
tgtcc |
11982497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University