View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18577_high_9 (Length: 324)
Name: NF18577_high_9
Description: NF18577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18577_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 38711487 - 38711794
Alignment:
| Q |
13 |
attcttggtgttgcatgaatcataatcttgtttgtttacttccaacactgaatcagatcctttatgatacttgaaatctgcaagacnnnnnnncaccatc |
112 |
Q |
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| T |
38711487 |
attcttggtgttgcatgaatcataatcttgtttgtttacttccaacactgaatcggatcctttatgatacttgaaatctgcaagacaaaaaaacaccatc |
38711586 |
T |
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| Q |
113 |
atgtaaaataaaacaaaattttacacttttttctttgaataagtttatagattctttttaaaagactatttacaatcctgacttttaaacttaagacttc |
212 |
Q |
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| T |
38711587 |
gtgtaaaataaaacaaaattttacacttttttctttgaataagtttatagattctttt-aaaagactatttacaatcctgacttttaaacttaagacttc |
38711685 |
T |
|
| Q |
213 |
aatggatttcgacacaaatttttaaggttttatagaacttaaatcaaagttattaggaaatgcaacaagtcatcattagtatcctccatggtctaaaatt |
312 |
Q |
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| T |
38711686 |
aatggatttcgacacaaatttttaaggttttatagaacttaaatcaaagttattaggaaatgcaacaagtcatcattagtatcctccatggtctaaaatt |
38711785 |
T |
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| Q |
313 |
catggttat |
321 |
Q |
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| T |
38711786 |
catggttat |
38711794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 38720019 - 38720094
Alignment:
| Q |
17 |
ttggtgttgcatgaatcataatcttgtttgtttacttccaacactgaatcagatcctttatgatacttgaaatctg |
92 |
Q |
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| T |
38720019 |
ttggtgttgcatgaatcaaagtcttgtttgttaaccaccaatactgaatcggatcctttattatacttgaaatctg |
38720094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 42094874 - 42094951
Alignment:
| Q |
17 |
ttggtgttgcatgaatcataatcttgtttgtttacttccaacactgaatcagatcctttatgatacttgaaatctgca |
94 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||| | |||| | |||||||||||||||| |
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| T |
42094874 |
ttggtgttgcatgaatcatgatcttgtttgtttacaaccaacactgaatcaatttctttgttatacttgaaatctgca |
42094951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 39704491 - 39704418
Alignment:
| Q |
21 |
tgttgcatgaatcataatcttgtttgtttacttccaacactgaatcagatcctttatgatacttgaaatctgca |
94 |
Q |
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| T |
39704491 |
tgttgcatgaatcataatcgtgtttgtttaccaccaatactgaatcggatcctttgttgtacttgaaaactgca |
39704418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 39711075 - 39710994
Alignment:
| Q |
13 |
attcttggtgttgcatgaatcataatcttgtttgtttacttccaacactgaatcagatcctttatgatacttgaaatctgca |
94 |
Q |
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|||||| |||| |||||||||||| | ||| |||||||| ||||||| |||||||||||||| | |||||||||| ||||| |
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| T |
39711075 |
attctttgtgtcgcatgaatcatagttttggttgtttaccaccaacacagaatcagatcctttgttatacttgaaacctgca |
39710994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 39690730 - 39690803
Alignment:
| Q |
21 |
tgttgcatgaatcataatcttgtttgtttacttccaacactgaatcagatcctttatgatacttgaaatctgca |
94 |
Q |
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||||||||||||||||||| ||||||||||| |||| ||||||||| |||| || | ||||||||| ||||| |
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| T |
39690730 |
tgttgcatgaatcataatcgtgtttgtttaccaccaatactgaatcaaatccgttgttgtacttgaaaactgca |
39690803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 51319935 - 51319868
Alignment:
| Q |
21 |
tgttgcatgaatcataatcttgtttgtttacttccaacactgaatcagatcctttatgatacttgaaa |
88 |
Q |
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||||||| |||||||| |||||||||||||| | | ||| |||||||| ||||| |||||||||||| |
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| T |
51319935 |
tgttgcaagaatcatagtcttgtttgtttaccactagcaccgaatcagaacctttttgatacttgaaa |
51319868 |
T |
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